26 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nova1	Uncharacterized protein. (509 aa)
	fmr1	Uncharacterized protein. (564 aa)
	Nova2.L	Uncharacterized protein. (434 aa)
	nova1-2	Uncharacterized protein. (508 aa)
	tardbp	Uncharacterized protein. (413 aa)
	Drosha.S	Uncharacterized protein. (1308 aa)
	xpo5	Importin N-terminal domain-containing protein. (1252 aa)
	A0A1L8G0Y3	Xpo1 domain-containing protein. (974 aa)
	fxr1	Uncharacterized protein. (675 aa)
	Srsf9.L	Uncharacterized protein. (230 aa)
	wwp2	E3 ubiquitin-protein ligase. (739 aa)
	sumo2	Small ubiquitin-related modifier. (95 aa)
	zfr	DZF domain-containing protein. (1054 aa)
	ilf3	Uncharacterized protein. (902 aa)
	Kcna1.S	BTB domain-containing protein; Belongs to the potassium channel family. (489 aa)
	wwp2-2	E3 ubiquitin-protein ligase. (732 aa)
	creb1	Creb1-prov protein. (324 aa)
	ro60	TROVE domain-containing protein. (538 aa)
	rps14	Rps14-prov protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	aimp2	MGC80304 protein. (311 aa)
	fmr1-A	Fragile X mental retardation 1. (564 aa)
	eif2ak2	Double stranded RNA activated protein kinase 1. (578 aa)
	fxr1-2	LOC398050 protein. (649 aa)
	Sumo1.S	Ubiquitin-like domain-containing protein. (141 aa)
	Sumo1.L	Ubiquitin-like domain-containing protein. (148 aa)
	Aimp2.L	Uncharacterized protein. (311 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8G0Y3	Drosha.S	A0A1L8G0Y3	A0A1L8FSC4	Xpo1 domain-containing protein.	Uncharacterized protein.	0.977
A0A1L8G0Y3	fxr1	A0A1L8G0Y3	A0A1L8G3Y8	Xpo1 domain-containing protein.	Uncharacterized protein.	0.410
A0A1L8G0Y3	fxr1-2	A0A1L8G0Y3	A3KMH8	Xpo1 domain-containing protein.	LOC398050 protein.	0.410
A0A1L8G0Y3	ilf3	A0A1L8G0Y3	A0A1L8H2T5	Xpo1 domain-containing protein.	Uncharacterized protein.	0.740
A0A1L8G0Y3	ro60	A0A1L8G0Y3	A0A1L8GNJ3	Xpo1 domain-containing protein.	TROVE domain-containing protein.	0.520
A0A1L8G0Y3	xpo5	A0A1L8G0Y3	A0A1L8G0T7	Xpo1 domain-containing protein.	Importin N-terminal domain-containing protein.	0.903
Aimp2.L	wwp2	A0A1L8EY15	A0A1L8GER6	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.667
Aimp2.L	wwp2-2	A0A1L8EY15	A0A1L8GKX7	Uncharacterized protein.	E3 ubiquitin-protein ligase.	0.667
Drosha.S	A0A1L8G0Y3	A0A1L8FSC4	A0A1L8G0Y3	Uncharacterized protein.	Xpo1 domain-containing protein.	0.977
Drosha.S	fmr1	A0A1L8FSC4	A0A1L8F2W4	Uncharacterized protein.	Uncharacterized protein.	0.558
Drosha.S	fmr1-A	A0A1L8FSC4	B7ZRL0	Uncharacterized protein.	Fragile X mental retardation 1.	0.566
Drosha.S	fxr1	A0A1L8FSC4	A0A1L8G3Y8	Uncharacterized protein.	Uncharacterized protein.	0.529
Drosha.S	fxr1-2	A0A1L8FSC4	A3KMH8	Uncharacterized protein.	LOC398050 protein.	0.529
Drosha.S	rps14	A0A1L8FSC4	Q6PI76	Uncharacterized protein.	Rps14-prov protein; Belongs to the universal ribosomal protein uS11 family.	0.646
Drosha.S	tardbp	A0A1L8FSC4	A0A1L8FKV7	Uncharacterized protein.	Uncharacterized protein.	0.668
Drosha.S	xpo5	A0A1L8FSC4	A0A1L8G0T7	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.976
Kcna1.S	rps14	A0A1L8GR18	Q6PI76	BTB domain-containing protein; Belongs to the potassium channel family.	Rps14-prov protein; Belongs to the universal ribosomal protein uS11 family.	0.472
Nova2.L	fmr1	A0A1L8F847	A0A1L8F2W4	Uncharacterized protein.	Uncharacterized protein.	0.504
Nova2.L	fmr1-A	A0A1L8F847	B7ZRL0	Uncharacterized protein.	Fragile X mental retardation 1.	0.503
Nova2.L	tardbp	A0A1L8F847	A0A1L8FKV7	Uncharacterized protein.	Uncharacterized protein.	0.407