STRINGSTRING
Tdp2.S Tdp2.S mcm6.2 mcm6.2 sumo2 sumo2 h3f3b h3f3b A0A1L8ENU1 A0A1L8ENU1 Sumo1.S Sumo1.S usp7 usp7 rtel1 rtel1 top1.1 top1.1 Sumo1.L Sumo1.L usp7-2 usp7-2 A0A1L8EY07 A0A1L8EY07 top3a top3a Endog.L Endog.L Alkbh1.L Alkbh1.L Tdp1.L Tdp1.L rad51 rad51 cdk1 cdk1 chek1 chek1 Cdk1.L Cdk1.L chek1-2 chek1-2 A0A1L8FQ56 A0A1L8FQ56 Cdc25a.S Cdc25a.S A0A1L8FQA5 A0A1L8FQA5 Vim.S Vim.S mcm4 mcm4 vcpip1 vcpip1 Vim.L Vim.L mcm6 mcm6 Mcm4.S Mcm4.S vcpip1-2 vcpip1-2 hist2h3c hist2h3c H2B-2 H2B-2 sprtn sprtn Znf451.L Znf451.L A0A1L8G6R5 A0A1L8G6R5 A0A1L8G6S1 A0A1L8G6S1 A0A1L8G795 A0A1L8G795 hltf hltf top1.2 top1.2 ccs ccs Hmces.L Hmces.L Cdc25c1 Cdc25c1 rad50 rad50 rad50-2 rad50-2 Dnmt1.L Dnmt1.L rev1 rev1 rev1-2 rev1-2 Vcp.S Vcp.S Rnf4-a Rnf4-a Pias4.L Pias4.L Chek2.L Chek2.L Top3b.L Top3b.L cdc45 cdc45 A0A310TM08 A0A310TM08 A0A310TTQ1 A0A310TTQ1 A0A310U368 A0A310U368 parp1 parp1 rnf4 rnf4 top2a top2a H2B H2B pcna pcna
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tdp2.SEndo/exonuclease/phosphatase domain-containing protein. (382 aa)
mcm6.2DNA helicase; Belongs to the MCM family. (825 aa)
sumo2Small ubiquitin-related modifier. (95 aa)
h3f3bHistone H3; Belongs to the histone H3 family. (136 aa)
A0A1L8ENU1Uncharacterized protein; Belongs to the histone H2B family. (98 aa)
Sumo1.SUbiquitin-like domain-containing protein. (141 aa)
usp7Uncharacterized protein; Belongs to the peptidase C19 family. (1123 aa)
rtel1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1275 aa)
top1.1DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (821 aa)
Sumo1.LUbiquitin-like domain-containing protein. (148 aa)
usp7-2Usp7; Belongs to the peptidase C19 family. (1124 aa)
A0A1L8EY07Histone H3; Belongs to the histone H3 family. (120 aa)
top3aDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1022 aa)
Endog.LEndonuclease. (290 aa)
Alkbh1.LFe2OG dioxygenase domain-containing protein. (397 aa)
Tdp1.LUncharacterized protein. (597 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (336 aa)
cdk1Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (302 aa)
chek1Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (474 aa)
Cdk1.LProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (333 aa)
chek1-2Protein kinase domain-containing protein. (510 aa)
A0A1L8FQ56Histone H2B; Belongs to the histone H2B family. (126 aa)
Cdc25a.SRhodanese domain-containing protein. (172 aa)
A0A1L8FQA5Histone H2B; Belongs to the histone H2B family. (126 aa)
Vim.SIF rod domain-containing protein; Belongs to the intermediate filament family. (463 aa)
mcm4DNA helicase; Belongs to the MCM family. (858 aa)
vcpip1OTU domain-containing protein. (1186 aa)
Vim.LIF rod domain-containing protein; Belongs to the intermediate filament family. (458 aa)
mcm6DNA helicase; Belongs to the MCM family. (821 aa)
Mcm4.SDNA helicase; Belongs to the MCM family. (863 aa)
vcpip1-2OTU domain-containing protein. (1191 aa)
hist2h3cHistone H3; Belongs to the histone H3 family. (136 aa)
H2B-2Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (233 aa)
sprtnUncharacterized protein. (565 aa)
Znf451.LUncharacterized protein. (1207 aa)
A0A1L8G6R5Histone H2B; Belongs to the histone H2B family. (347 aa)
A0A1L8G6S1Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (238 aa)
A0A1L8G795Histone H2B; Belongs to the histone H2B family. (126 aa)
hltfUncharacterized protein. (1000 aa)
top1.2DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (770 aa)
ccsHMA domain-containing protein. (274 aa)
Hmces.LAbasic site processing protein HMCES; Sensor of abasic sites in single-stranded DNA (ssDNA) required to preserve genome integrity by promoting error-free repair of abasic sites. Acts as an enzyme that recognizes and binds abasic sites in ssDNA at replication forks and chemically modifies the lesion by forming a covalent cross-link with DNA. The HMCES DNA-protein cross- link is then degraded by the proteasome. Promotes error-free repair of abasic sites by acting as a 'suicide' enzyme that is degraded, thereby protecting abasic sites from translesion synthesis (TLS) polymerases and endon [...] (365 aa)
Cdc25c1Rhodanese domain-containing protein. (550 aa)
rad50Zinc-hook domain-containing protein. (1311 aa)
rad50-2Zinc-hook domain-containing protein. (1312 aa)
Dnmt1.LDNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (1488 aa)
rev1DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1230 aa)
rev1-2DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1237 aa)
Vcp.SUncharacterized protein; Belongs to the AAA ATPase family. (805 aa)
Rnf4-aRING-type domain-containing protein. (190 aa)
Pias4.LUncharacterized protein. (544 aa)
Chek2.LUncharacterized protein. (392 aa)
Top3b.LDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (824 aa)
cdc45Uncharacterized protein. (567 aa)
A0A310TM08Histone H2B; Belongs to the histone H2B family. (126 aa)
A0A310TTQ1Histone H3; Belongs to the histone H3 family. (136 aa)
A0A310U368Histone H2B; Belongs to the histone H2B family. (94 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1011 aa)
rnf4LOC495944 protein. (190 aa)
top2aDNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1579 aa)
H2BHistone H2B; Belongs to the histone H2B family. (126 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
Your Current Organism:
Xenopus laevis
NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna
Server load: low (12%) [HD]