18 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Zp2.L	ZP domain-containing protein. (699 aa)
	c5ar1	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (348 aa)
	c5ar1-2	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (349 aa)
	tectb	ZP domain-containing protein. (329 aa)
	tectb-2	ZP domain-containing protein. (329 aa)
	crisp2	ShKT domain-containing protein; Belongs to the CRISP family. (241 aa)
	Wbp2nl.L	GRAM domain-containing protein. (291 aa)
	Adam28.S	Uncharacterized protein. (769 aa)
	vwf	Uncharacterized protein. (2841 aa)
	Spam1.L	Hyaluronidase. (512 aa)
	Adam28.L	Uncharacterized protein. (658 aa)
	Serpine1.L	SERPIN domain-containing protein; Belongs to the serpin family. (403 aa)
	Srrt.L	Uncharacterized protein. (844 aa)
	slc12a9	Uncharacterized protein. (899 aa)
	epo	Uncharacterized protein. (181 aa)
	gigyf1	GYF domain-containing protein. (996 aa)
	spink2	Kazal-like domain-containing protein. (80 aa)
	slc6a5	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (790 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adam28.L	Spam1.L	A0A1L8H1S4	A0A1L8GZ43	Uncharacterized protein.	Hyaluronidase.	0.534
Adam28.L	vwf	A0A1L8H1S4	A0A1L8GWR2	Uncharacterized protein.	Uncharacterized protein.	0.484
Adam28.S	Spam1.L	A0A1L8GRZ8	A0A1L8GZ43	Uncharacterized protein.	Hyaluronidase.	0.534
Adam28.S	vwf	A0A1L8GRZ8	A0A1L8GWR2	Uncharacterized protein.	Uncharacterized protein.	0.487
Spam1.L	Adam28.L	A0A1L8GZ43	A0A1L8H1S4	Hyaluronidase.	Uncharacterized protein.	0.534
Spam1.L	Adam28.S	A0A1L8GZ43	A0A1L8GRZ8	Hyaluronidase.	Uncharacterized protein.	0.534
Spam1.L	Zp2.L	A0A1L8GZ43	A0A1L8EY26	Hyaluronidase.	ZP domain-containing protein.	0.454
Zp2.L	Spam1.L	A0A1L8EY26	A0A1L8GZ43	ZP domain-containing protein.	Hyaluronidase.	0.454
Zp2.L	crisp2	A0A1L8EY26	A0A1L8GBX4	ZP domain-containing protein.	ShKT domain-containing protein; Belongs to the CRISP family.	0.453
c5ar1	c5ar1-2	A0A1L8F3V4	A0A1L8F8P9	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.901
c5ar1-2	c5ar1	A0A1L8F8P9	A0A1L8F3V4	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.901
crisp2	Zp2.L	A0A1L8GBX4	A0A1L8EY26	ShKT domain-containing protein; Belongs to the CRISP family.	ZP domain-containing protein.	0.453
vwf	Adam28.L	A0A1L8GWR2	A0A1L8H1S4	Uncharacterized protein.	Uncharacterized protein.	0.484
vwf	Adam28.S	A0A1L8GWR2	A0A1L8GRZ8	Uncharacterized protein.	Uncharacterized protein.	0.487