27 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sult1e1	Sulfotransferase; Belongs to the sulfotransferase 1 family. (303 aa)
	dnaja3	Uncharacterized protein. (468 aa)
	Dnaja3.L	Uncharacterized protein. (457 aa)
	Exo1.S	Uncharacterized protein. (734 aa)
	atrx	Uncharacterized protein. (2276 aa)
	Daxx.L	Daxx domain-containing protein. (911 aa)
	Dna2.S	Uncharacterized protein. (1053 aa)
	chek1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (474 aa)
	chek1-2	Protein kinase domain-containing protein. (510 aa)
	Myb.S	Uncharacterized protein. (626 aa)
	tinf2	TRF1 interacting nuclear factor 2. (364 aa)
	Atr.L	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2654 aa)
	atrip	Uncharacterized protein. (801 aa)
	Rad26	Uncharacterized protein. (798 aa)
	Rad52.S	Uncharacterized protein. (429 aa)
	rad50	Zinc-hook domain-containing protein. (1311 aa)
	rad50-2	Zinc-hook domain-containing protein. (1312 aa)
	Tp53.L	P53 domain-containing protein. (137 aa)
	Mrc1.L	C-type lectin domain-containing protein. (220 aa)
	Clspn.S	Claspin. (1286 aa)
	Chek2.L	Uncharacterized protein. (392 aa)
	polq	Uncharacterized protein. (2542 aa)
	ptch2-2	Patched-2. (1413 aa)
	tert	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1191 aa)
	Hus1	Checkpoint protein; Belongs to the HUS1 family. (282 aa)
	rad9a	Cell cycle checkpoint control protein; Belongs to the rad9 family. (377 aa)
	ptch2	SSD domain-containing protein. (1422 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atr.L	Chek2.L	A0A1L8GAP7	A0A1L8I0A0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.999
Atr.L	Clspn.S	A0A1L8GAP7	F8WKR8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Claspin.	0.955
Atr.L	Dna2.S	A0A1L8GAP7	A0A1L8FF41	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.982
Atr.L	Exo1.S	A0A1L8GAP7	A0A1L8F3G5	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.995
Atr.L	Hus1	A0A1L8GAP7	Q8JHD8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Checkpoint protein; Belongs to the HUS1 family.	0.999
Atr.L	Mrc1.L	A0A1L8GAP7	A0A1L8H4B7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	C-type lectin domain-containing protein.	0.778
Atr.L	Rad26	A0A1L8GAP7	A0A1L8GP12	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.999
Atr.L	Rad52.S	A0A1L8GAP7	A0A1L8GQQ7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.995
Atr.L	Tp53.L	A0A1L8GAP7	A0A1L8H4M6	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	P53 domain-containing protein.	0.991
Atr.L	atrip	A0A1L8GAP7	A0A1L8GH95	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.999
Atr.L	atrx	A0A1L8GAP7	A0A1L8F729	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.505
Atr.L	chek1	A0A1L8GAP7	A0A1L8FFS1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.999
Atr.L	chek1-2	A0A1L8GAP7	A0A1L8FL95	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Protein kinase domain-containing protein.	0.999
Atr.L	polq	A0A1L8GAP7	A0A1L8HBZ7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.653
Atr.L	rad50	A0A1L8GAP7	A0A1L8GVF0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Zinc-hook domain-containing protein.	0.955
Atr.L	rad50-2	A0A1L8GAP7	A0A1L8GXM0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Zinc-hook domain-containing protein.	0.955
Atr.L	rad9a	A0A1L8GAP7	Q7ZZU5	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.998
Atr.L	tert	A0A1L8GAP7	Q9DE32	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.644
Chek2.L	Atr.L	A0A1L8I0A0	A0A1L8GAP7	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.999
Chek2.L	Clspn.S	A0A1L8I0A0	F8WKR8	Uncharacterized protein.	Claspin.	0.891