19 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ints5	Uncharacterized protein. (939 aa)
	ints1	DUF3677 domain-containing protein. (2191 aa)
	Dedd.L	DED domain-containing protein. (318 aa)
	ints3	Uncharacterized protein. (1018 aa)
	Prpf31.S	Nop domain-containing protein. (542 aa)
	tgs1	Uncharacterized protein. (747 aa)
	Ints8.S	Uncharacterized protein. (1006 aa)
	Tgs1.L	Uncharacterized protein. (831 aa)
	Ints7.S	Uncharacterized protein. (978 aa)
	Ints9.S	Beta-Casp domain-containing protein. (600 aa)
	toe1	C3H1-type domain-containing protein. (520 aa)
	toe1-2	C3H1-type domain-containing protein. (515 aa)
	ints13	Uncharacterized protein. (707 aa)
	ints14	VWFA domain-containing protein. (518 aa)
	Ints4.L	Uncharacterized protein. (333 aa)
	ints12	PHD-type domain-containing protein. (464 aa)
	ints12-2	PHD-type domain-containing protein. (464 aa)
	ints10	Uncharacterized protein. (737 aa)
	dedd	LOC496151 protein. (318 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dedd.L	Ints8.S	A0A1L8FD23	A0A1L8FTK5	DED domain-containing protein.	Uncharacterized protein.	0.545
Dedd.L	ints1	A0A1L8FD23	A0A1L8EXS4	DED domain-containing protein.	DUF3677 domain-containing protein.	0.555
Dedd.L	toe1	A0A1L8FD23	A0A1L8GFN0	DED domain-containing protein.	C3H1-type domain-containing protein.	0.569
Dedd.L	toe1-2	A0A1L8FD23	A0A1L8GM42	DED domain-containing protein.	C3H1-type domain-containing protein.	0.565
Ints4.L	Ints7.S	A0A1L8HJE3	A0A1L8G173	Uncharacterized protein.	Uncharacterized protein.	0.981
Ints4.L	Ints8.S	A0A1L8HJE3	A0A1L8FTK5	Uncharacterized protein.	Uncharacterized protein.	0.959
Ints4.L	Ints9.S	A0A1L8HJE3	A0A1L8G5L4	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.996
Ints4.L	ints1	A0A1L8HJE3	A0A1L8EXS4	Uncharacterized protein.	DUF3677 domain-containing protein.	0.999
Ints4.L	ints10	A0A1L8HJE3	A0A1L8HWD7	Uncharacterized protein.	Uncharacterized protein.	0.925
Ints4.L	ints12	A0A1L8HJE3	A0A1L8HM63	Uncharacterized protein.	PHD-type domain-containing protein.	0.843
Ints4.L	ints12-2	A0A1L8HJE3	A0A1L8HV76	Uncharacterized protein.	PHD-type domain-containing protein.	0.843
Ints4.L	ints13	A0A1L8HJE3	A0A1L8GQ85	Uncharacterized protein.	Uncharacterized protein.	0.877
Ints4.L	ints14	A0A1L8HJE3	A0A1L8GSI6	Uncharacterized protein.	VWFA domain-containing protein.	0.863
Ints4.L	ints3	A0A1L8HJE3	A0A1L8FD93	Uncharacterized protein.	Uncharacterized protein.	0.981
Ints4.L	ints5	A0A1L8HJE3	A0A1L8GJU2	Uncharacterized protein.	Uncharacterized protein.	0.981
Ints7.S	Ints4.L	A0A1L8G173	A0A1L8HJE3	Uncharacterized protein.	Uncharacterized protein.	0.981
Ints7.S	Ints8.S	A0A1L8G173	A0A1L8FTK5	Uncharacterized protein.	Uncharacterized protein.	0.996
Ints7.S	Ints9.S	A0A1L8G173	A0A1L8G5L4	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.986
Ints7.S	ints1	A0A1L8G173	A0A1L8EXS4	Uncharacterized protein.	DUF3677 domain-containing protein.	0.997
Ints7.S	ints10	A0A1L8G173	A0A1L8HWD7	Uncharacterized protein.	Uncharacterized protein.	0.940