36 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	foxc1	Fork-head domain-containing protein. (492 aa)
	gata1	Uncharacterized protein. (367 aa)
	A0A1L8F1K8	Uncharacterized protein. (572 aa)
	Itga2b.2.L	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1034 aa)
	pecam1	Uncharacterized protein. (684 aa)
	Itga2b.1.S	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1064 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	stmn3-2	Stathmin; Belongs to the stathmin family. (180 aa)
	Gapdh.S	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	stmn2-2	Stathmin; Belongs to the stathmin family. (178 aa)
	pecam1-2	Platelet endothelial cell adhesion molecule. (727 aa)
	stmn3	Stathmin; Belongs to the stathmin family. (180 aa)
	vezf1	Vezf1 protein. (511 aa)
	edn1	LOC100158354 protein. (221 aa)
	gata1a-A	GATA binding factor-1. (359 aa)
	Kit.L	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (964 aa)
	tek	Uncharacterized protein. (1126 aa)
	kdr	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1326 aa)
	Kit.S	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (963 aa)
	stmn1	Stathmin; Belongs to the stathmin family. (145 aa)
	Runx1.L	Runt-related transcription factor. (462 aa)
	Stmn1.S	Uncharacterized protein. (242 aa)
	gata2	Uncharacterized protein. (464 aa)
	tal1	BHLH domain-containing protein. (360 aa)
	foxc2	Fork-head domain-containing protein. (465 aa)
	cdh5-2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (775 aa)
	lmo2-2	Uncharacterized protein. (158 aa)
	Foxc2.S	Fork-head domain-containing protein. (461 aa)
	cdh5	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (774 aa)
	lmo2	Uncharacterized protein. (158 aa)
	sox7-2	Uncharacterized protein. (362 aa)
	stmn4	Stathmin; Belongs to the stathmin family. (185 aa)
	sox7	Uncharacterized protein. (363 aa)
	mmut	B12-binding domain-containing protein. (758 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (178 aa)
	foxc1-2	Fork-head domain-containing protein. (495 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F1K8	Kit.L	A0A1L8F1K8	A0A1L8HTR4	Uncharacterized protein.	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.437
A0A1L8F1K8	Kit.S	A0A1L8F1K8	A0A1L8HL85	Uncharacterized protein.	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.437
A0A1L8F1K8	cdh5	A0A1L8F1K8	A0A1L8GEW5	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.660
A0A1L8F1K8	cdh5-2	A0A1L8F1K8	A0A1L8GKR1	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.660
A0A1L8F1K8	edn1	A0A1L8F1K8	Q08B43	Uncharacterized protein.	LOC100158354 protein.	0.452
A0A1L8F1K8	pecam1	A0A1L8F1K8	A0A1L8ENK4	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A1L8F1K8	pecam1-2	A0A1L8F1K8	Q5W5X8	Uncharacterized protein.	Platelet endothelial cell adhesion molecule.	0.526
A0A1L8F1K8	tek	A0A1L8F1K8	A0A1L8HP14	Uncharacterized protein.	Uncharacterized protein.	0.606
Foxc2.S	cdh5	A0A1L8GEW7	A0A1L8GEW5	Fork-head domain-containing protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.561
Foxc2.S	cdh5-2	A0A1L8GEW7	A0A1L8GKR1	Fork-head domain-containing protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.561
Foxc2.S	gata2	A0A1L8GEW7	A0A1L8GPW2	Fork-head domain-containing protein.	Uncharacterized protein.	0.724
Foxc2.S	kdr	A0A1L8GEW7	A0A1L8HLA0	Fork-head domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.533
Foxc2.S	pecam1	A0A1L8GEW7	A0A1L8ENK4	Fork-head domain-containing protein.	Uncharacterized protein.	0.476
Foxc2.S	pecam1-2	A0A1L8GEW7	Q5W5X8	Fork-head domain-containing protein.	Platelet endothelial cell adhesion molecule.	0.480
Foxc2.S	tal1	A0A1L8GEW7	A0A1L8GMB6	Fork-head domain-containing protein.	BHLH domain-containing protein.	0.488
Foxc2.S	tek	A0A1L8GEW7	A0A1L8HP14	Fork-head domain-containing protein.	Uncharacterized protein.	0.532
Gapdh.S	Kit.L	Q7ZY52	A0A1L8HTR4	Glyceraldehyde-3-phosphate dehydrogenase.	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.446
Gapdh.S	Kit.S	Q7ZY52	A0A1L8HL85	Glyceraldehyde-3-phosphate dehydrogenase.	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.446
Gapdh.S	gapdh	Q7ZY52	Q8AY70	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.900
Gapdh.S	kdr	Q7ZY52	A0A1L8HLA0	Glyceraldehyde-3-phosphate dehydrogenase.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.404