27 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gosr2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	gosr2-2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	Brca1.L	Uncharacterized protein. (1582 aa)
	A0A1L8EUA6	Uncharacterized protein. (3827 aa)
	Notch1.S	Uncharacterized protein. (2524 aa)
	notch1	Uncharacterized protein. (2521 aa)
	actc1	Uncharacterized protein. (377 aa)
	nrp1	Neuropilin; Belongs to the neuropilin family. (926 aa)
	gata4	Uncharacterized protein. (392 aa)
	maf	BZIP domain-containing protein; Belongs to the bZIP family. (344 aa)
	maf-2	BZIP domain-containing protein; Belongs to the bZIP family. (351 aa)
	gas1	Uncharacterized protein. (299 aa)
	homez	Homeobox domain-containing protein. (516 aa)
	tbx5	Uncharacterized protein. (519 aa)
	gas1-2	Uncharacterized protein. (284 aa)
	homez-2	Homeobox domain-containing protein. (512 aa)
	sh2b3	Uncharacterized protein. (618 aa)
	tbx20	T-box 20. (441 aa)
	tbx5-2	T-box transcription factor Tbx5. (519 aa)
	src	Tyrosine-protein kinase. (532 aa)
	nppb-2	Natriuretic peptide type B. (137 aa)
	ptpn11b	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	gata4-2	MGC81427 protein. (394 aa)
	ucp2	MGC78829 protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (307 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	klf9	Basic transcription element binding protein 1. (292 aa)
	Ptpn11.S	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (595 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Brca1.L	Notch1.S	A0A1L8ETS4	A0A1L8F124	Uncharacterized protein.	Uncharacterized protein.	0.408
Brca1.L	klf9	A0A1L8ETS4	Q91632	Uncharacterized protein.	Basic transcription element binding protein 1.	0.547
Notch1.S	Brca1.L	A0A1L8F124	A0A1L8ETS4	Uncharacterized protein.	Uncharacterized protein.	0.408
Notch1.S	actl6a	A0A1L8F124	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.769
Notch1.S	gata4	A0A1L8F124	A0A1L8G5M0	Uncharacterized protein.	Uncharacterized protein.	0.547
Notch1.S	gata4-2	A0A1L8F124	Q6GR12	Uncharacterized protein.	MGC81427 protein.	0.547
Notch1.S	src	A0A1L8F124	Q2TAR1	Uncharacterized protein.	Tyrosine-protein kinase.	0.551
Notch1.S	tbx20	A0A1L8F124	B7ZQT9	Uncharacterized protein.	T-box 20.	0.477
Notch1.S	tbx5	A0A1L8F124	A0A1L8HPY2	Uncharacterized protein.	Uncharacterized protein.	0.430
Notch1.S	tbx5-2	A0A1L8F124	B7ZRZ7	Uncharacterized protein.	T-box transcription factor Tbx5.	0.430
Ptpn11.S	actl6a	Q92124	Q7ZYI5	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Baf53a-pending-prov protein; Belongs to the actin family.	0.448
Ptpn11.S	src	Q92124	Q2TAR1	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.901
actc1	actl6a	A0A1L8FAU9	Q7ZYI5	Uncharacterized protein.	Baf53a-pending-prov protein; Belongs to the actin family.	0.786
actc1	tbx5	A0A1L8FAU9	A0A1L8HPY2	Uncharacterized protein.	Uncharacterized protein.	0.427
actc1	tbx5-2	A0A1L8FAU9	B7ZRZ7	Uncharacterized protein.	T-box transcription factor Tbx5.	0.427
actl6a	Notch1.S	Q7ZYI5	A0A1L8F124	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.769
actl6a	Ptpn11.S	Q7ZYI5	Q92124	Baf53a-pending-prov protein; Belongs to the actin family.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.448
actl6a	actc1	Q7ZYI5	A0A1L8FAU9	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.786
actl6a	gata4	Q7ZYI5	A0A1L8G5M0	Baf53a-pending-prov protein; Belongs to the actin family.	Uncharacterized protein.	0.506
actl6a	gata4-2	Q7ZYI5	Q6GR12	Baf53a-pending-prov protein; Belongs to the actin family.	MGC81427 protein.	0.506