49 items (Xenopus laevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Opsin	Rhodopsin. (403 aa)
	A0A1L8EN80	Uncharacterized protein. (202 aa)
	ihh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (409 aa)
	A0A1L8EUU9	Uncharacterized protein. (202 aa)
	ihh-2	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (409 aa)
	Pcnt.L	PACT_coil_coil domain-containing protein. (4481 aa)
	otx2	Homeobox domain-containing protein. (288 aa)
	Cdk20.S	Protein kinase domain-containing protein. (376 aa)
	otx2-2	Homeobox domain-containing protein. (289 aa)
	cdh2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (947 aa)
	Shh.L	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (444 aa)
	grk7	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (550 aa)
	mertk	Uncharacterized protein. (979 aa)
	grk7-2	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (551 aa)
	ift172	Uncharacterized protein. (1749 aa)
	Tub.S	Tubby-like protein; Belongs to the TUB family. (499 aa)
	Cdh3.S	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (880 aa)
	A0A1L8GHL0	Rhodopsin. (354 aa)
	tub	Tubby-like protein; Belongs to the TUB family. (499 aa)
	cdh1	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (871 aa)
	cdh3	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (905 aa)
	rpe65	Uncharacterized protein. (533 aa)
	Abca4.L	Uncharacterized protein. (1776 aa)
	Rho.L	Rhodopsin. (459 aa)
	rlbp1	CRAL-TRIO domain-containing protein. (317 aa)
	Cep290.L	CEP209_CC5 domain-containing protein. (2459 aa)
	Tjp1.S	Uncharacterized protein; Belongs to the MAGUK family. (1705 aa)
	rpl8	Ribosomal_L2_C domain-containing protein. (257 aa)
	grk1	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (557 aa)
	ift88	Uncharacterized protein. (823 aa)
	Ofd1.L	LisH domain-containing protein. (1074 aa)
	grk1-2	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (557 aa)
	casp3.2	Uncharacterized protein; Belongs to the peptidase C14A family. (288 aa)
	Casp3.L	Uncharacterized protein; Belongs to the peptidase C14A family. (253 aa)
	pde6b	Phosphodiesterase. (858 aa)
	LOC100189571	Uncharacterized protein. (608 aa)
	ctnnb1	Beta-catenin protein. (781 aa)
	plin2	Perilipin; Belongs to the perilipin family. (404 aa)
	rcvrn.2	MGC84117 protein. (192 aa)
	tulp3	Tub-prov protein; Belongs to the TUB family. (506 aa)
	cdc16	Cdc16-prov protein. (621 aa)
	rcvrn.2-2	MGC84424 protein. (192 aa)
	plin2-2	Perilipin; Belongs to the perilipin family. (428 aa)
	iqcb1	MGC81507 protein. (594 aa)
	rlbp1-2	Rlbp1-prov protein. (317 aa)
	Gapdh.S	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	actl6a	Baf53a-pending-prov protein; Belongs to the actin family. (429 aa)
	rpe65-2	Rpe65 protein. (533 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8EN80	A0A1L8GHL0	A0A1L8EN80	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956
A0A1L8EN80	Opsin	A0A1L8EN80	A0A1L8GPM0	Uncharacterized protein.	Rhodopsin.	0.957
A0A1L8EN80	Rho.L	A0A1L8EN80	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.934
A0A1L8EN80	grk1	A0A1L8EN80	A0A1L8H8W4	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.990
A0A1L8EN80	grk1-2	A0A1L8EN80	A0A1L8HGX8	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.990
A0A1L8EN80	grk7	A0A1L8EN80	A0A1L8G4T3	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991
A0A1L8EN80	grk7-2	A0A1L8EN80	A0A1L8GB62	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991
A0A1L8EN80	otx2	A0A1L8EN80	A0A1L8EZU9	Uncharacterized protein.	Homeobox domain-containing protein.	0.576
A0A1L8EN80	otx2-2	A0A1L8EN80	A0A1L8FAB9	Uncharacterized protein.	Homeobox domain-containing protein.	0.576
A0A1L8EN80	pde6b	A0A1L8EN80	A0A1L8HVK6	Uncharacterized protein.	Phosphodiesterase.	0.598
A0A1L8EN80	rlbp1	A0A1L8EN80	A0A1L8GSJ0	Uncharacterized protein.	CRAL-TRIO domain-containing protein.	0.597
A0A1L8EN80	rlbp1-2	A0A1L8EN80	Q7SYZ4	Uncharacterized protein.	Rlbp1-prov protein.	0.597
A0A1L8EN80	rpe65	A0A1L8EN80	A0A1L8GLX0	Uncharacterized protein.	Uncharacterized protein.	0.569
A0A1L8EN80	rpe65-2	A0A1L8EN80	Q7ZYK2	Uncharacterized protein.	Rpe65 protein.	0.569
A0A1L8EUU9	A0A1L8GHL0	A0A1L8EUU9	A0A1L8GHL0	Uncharacterized protein.	Rhodopsin.	0.956
A0A1L8EUU9	Opsin	A0A1L8EUU9	A0A1L8GPM0	Uncharacterized protein.	Rhodopsin.	0.957
A0A1L8EUU9	Rho.L	A0A1L8EUU9	A0A1L8GPJ9	Uncharacterized protein.	Rhodopsin.	0.933
A0A1L8EUU9	grk1	A0A1L8EUU9	A0A1L8H8W4	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.992
A0A1L8EUU9	grk1-2	A0A1L8EUU9	A0A1L8HGX8	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.992
A0A1L8EUU9	grk7	A0A1L8EUU9	A0A1L8G4T3	Uncharacterized protein.	G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.	0.991