(97 nodes) Rab subfamily of small GTPases network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab1a	Rab1-prov protein. (204 aa)
	A0A1L8ELR0	Uncharacterized protein. (206 aa)
	rab5d	Uncharacterized protein. (213 aa)
	A0A1L8ER89	Uncharacterized protein. (201 aa)
	rab5c	Uncharacterized protein. (215 aa)
	rab22a	Uncharacterized protein. (210 aa)
	rab37	Uncharacterized protein. (218 aa)
	rab40c	SOCS box domain-containing protein. (286 aa)
	A0A1L8EYZ7	Uncharacterized protein. (201 aa)
	rab15	Uncharacterized protein. (212 aa)
	A0A1L8F1U3	Uncharacterized protein. (199 aa)
	A0A1L8F2A7	Uncharacterized protein. (201 aa)
	rab39b	Uncharacterized protein. (213 aa)
	A0A1L8F6P3	Uncharacterized protein. (201 aa)
	A0A1L8F6X6	Uncharacterized protein. (210 aa)
	rab39b-2	Uncharacterized protein. (213 aa)
	A0A1L8F8W0	Uncharacterized protein. (207 aa)
	rab15-2	Uncharacterized protein. (212 aa)
	Rab5a.L	Uncharacterized protein. (216 aa)
	rab31	Uncharacterized protein. (194 aa)
	A0A1L8FSN7	Uncharacterized protein. (243 aa)
	A0A1L8FT25	Uncharacterized protein. (482 aa)
	rab18	Uncharacterized protein. (205 aa)
	A0A1L8FW83	Uncharacterized protein. (198 aa)
	A0A1L8FYJ0	Uncharacterized protein. (377 aa)
	A0A1L8FYY8	Uncharacterized protein. (213 aa)
	A0A1L8FZ34	Uncharacterized protein. (211 aa)
	A0A1L8G5E4	Uncharacterized protein. (173 aa)
	rab32	Uncharacterized protein. (222 aa)
	A0A1L8GB84	Uncharacterized protein. (208 aa)
	A0A1L8GFW8	Uncharacterized protein. (217 aa)
	cracr2a	EF-hand domain-containing protein. (718 aa)
	A0A1L8GSM8	Uncharacterized protein. (656 aa)
	rab21	Uncharacterized protein. (220 aa)
	A0A1L8GUY4	Uncharacterized protein. (201 aa)
	rab19	Uncharacterized protein. (213 aa)
	cracr2a-2	EF-hand domain-containing protein. (718 aa)
	A0A1L8H0S2	Uncharacterized protein. (656 aa)
	rab34	Uncharacterized protein. (260 aa)
	rab7b	Uncharacterized protein. (201 aa)
	A0A1L8H7L9	Uncharacterized protein. (206 aa)
	rab5b	Uncharacterized protein. (215 aa)
	rab38	Uncharacterized protein. (212 aa)
	rab30	Uncharacterized protein. (213 aa)
	A0A1L8HBC0	Uncharacterized protein. (175 aa)
	rab34-2	Uncharacterized protein. (259 aa)
	Rab44.L	EF-hand domain-containing protein. (867 aa)
	A0A1L8HE83	Uncharacterized protein. (206 aa)
	Rab5b.L	Uncharacterized protein. (185 aa)
	rab38-2	Uncharacterized protein. (211 aa)
	A0A1L8HJW4	Uncharacterized protein. (203 aa)
	rab33b	Uncharacterized protein. (226 aa)
	A0A1L8HNE7	Uncharacterized protein. (218 aa)
	A0A1L8HNH9	Uncharacterized protein. (220 aa)
	rab8a	Uncharacterized protein. (207 aa)
	A0A1L8HP99	Uncharacterized protein. (720 aa)
	Rab33b.L	Uncharacterized protein. (226 aa)
	A0A1L8HZJ7	Uncharacterized protein. (215 aa)
	rab35l	Uncharacterized protein. (201 aa)
	A0A1L8I2D9	Uncharacterized protein. (227 aa)
	A0A310TNK4	Uncharacterized protein. (721 aa)
	LOC100037231	LOC100037231 protein. (209 aa)
	rab13	LOC100158399 protein. (201 aa)
	MGC131054	MGC131054 protein. (216 aa)
	rab32-2	MGC130912 protein. (222 aa)
	rab3d	Rab3d protein. (217 aa)
	MGC114680	MGC114680 protein. (278 aa)
	Q52KZ2_XENLA	Uncharacterized protein. (213 aa)
	rab11b.2	LOC496163 protein. (218 aa)
	rab3a	Rab3a-prov protein. (220 aa)
	rab40c-2	Rab40 protein. (286 aa)
	rab14	LOC494665 protein. (215 aa)
	LOC494642	LOC494642 protein. (218 aa)
	rab27a	LOC494641 protein. (221 aa)
	rab11a	MGC84419 protein. (216 aa)
	rab40b	MGC85390 protein. (278 aa)
	rab24	MGC85288 protein. (203 aa)
	rab8b	MGC85265 protein. (207 aa)
	rab8b-2	Rab8b-prov protein. (207 aa)
	rab7a	Rab7-prov protein. (207 aa)
	rab27b	MGC80016 protein. (218 aa)
	rab33a	MGC84415 protein. (215 aa)
	rab23	MGC82152 protein. (238 aa)
	rab3b	MGC84786 protein. (217 aa)
	rab25	MGC84182 protein. (216 aa)
	rab6b	MGC83971 protein. (208 aa)
	rab18-2	RAB18 protein. (206 aa)
	rab27a-2	MGC80943 protein. (221 aa)
	Rab4a	Rab4a-prov protein. (213 aa)
	rab7b-2	MGC80651 protein. (201 aa)
	rab29	MGC80435 protein. (204 aa)
	rab9a	Rab9a-b protein. (201 aa)
	rab2b	MGC78967 protein. (215 aa)
	rab9a-2	Rab9a-a protein. (201 aa)
	rab21-2	MGC68816 protein. (221 aa)
	rab7a-2	MGC68523 protein. (207 aa)
	rab10	MGC68629 protein. (200 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ELR0	A0A1L8F2A7	A0A1L8ELR0	A0A1L8F2A7	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A1L8ELR0	A0A1L8F6P3	A0A1L8ELR0	A0A1L8F6P3	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A1L8ELR0	A0A1L8F8W0	A0A1L8ELR0	A0A1L8F8W0	Uncharacterized protein.	Uncharacterized protein.	0.452
A0A1L8ELR0	Rab4a	A0A1L8ELR0	Q7ZXI8	Uncharacterized protein.	Rab4a-prov protein.	0.450
A0A1L8ELR0	rab14	A0A1L8ELR0	Q640I3	Uncharacterized protein.	LOC494665 protein.	0.523
A0A1L8ELR0	rab18	A0A1L8ELR0	A0A1L8FVI0	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A1L8ELR0	rab18-2	A0A1L8ELR0	Q6GM52	Uncharacterized protein.	RAB18 protein.	0.404
A0A1L8ELR0	rab31	A0A1L8ELR0	A0A1L8FSM9	Uncharacterized protein.	Uncharacterized protein.	0.489
A0A1L8ELR0	rab7b	A0A1L8ELR0	A0A1L8H751	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A1L8ELR0	rab7b-2	A0A1L8ELR0	Q6GP64	Uncharacterized protein.	MGC80651 protein.	0.445
A0A1L8ELR0	rab9a	A0A1L8ELR0	Q6GQ88	Uncharacterized protein.	Rab9a-b protein.	0.485
A0A1L8ELR0	rab9a-2	A0A1L8ELR0	Q6NU20	Uncharacterized protein.	Rab9a-a protein.	0.485
A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8ER89	rab14	A0A1L8ER89	Q640I3	Uncharacterized protein.	LOC494665 protein.	0.448
A0A1L8ER89	rab35l	A0A1L8ER89	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8EYZ7	A0A1L8ER89	A0A1L8EYZ7	A0A1L8ER89	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8EYZ7	rab14	A0A1L8EYZ7	Q640I3	Uncharacterized protein.	LOC494665 protein.	0.449
A0A1L8EYZ7	rab35l	A0A1L8EYZ7	A0A1L8I076	Uncharacterized protein.	Uncharacterized protein.	0.901
A0A1L8F1U3	A0A1L8F2A7	A0A1L8F1U3	A0A1L8F2A7	Uncharacterized protein.	Uncharacterized protein.	0.425
A0A1L8F1U3	A0A1L8F6P3	A0A1L8F1U3	A0A1L8F6P3	Uncharacterized protein.	Uncharacterized protein.	0.425