(57 nodes) Laminin-type epidermal growth factor-like domai network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1L8ELK9	Uncharacterized protein. (3520 aa)
	ntn1	Uncharacterized protein. (602 aa)
	ntn3	Uncharacterized protein. (588 aa)
	lama5	Uncharacterized protein. (3675 aa)
	ntn1-2	Uncharacterized protein. (602 aa)
	ntn3-2	Uncharacterized protein. (588 aa)
	A0A1L8F1F8	Uncharacterized protein. (742 aa)
	A0A1L8F4M9	Uncharacterized protein. (980 aa)
	Ntng2.L	Uncharacterized protein. (724 aa)
	Pear1.L	Uncharacterized protein. (943 aa)
	A0A1L8FDT4	Uncharacterized protein. (1583 aa)
	A0A1L8FG40	Uncharacterized protein. (2091 aa)
	megf6	Uncharacterized protein. (1617 aa)
	ntn5	Uncharacterized protein. (601 aa)
	megf8	Uncharacterized protein. (2730 aa)
	A0A1L8FI67	Uncharacterized protein. (1036 aa)
	A0A1L8FLY9	Uncharacterized protein. (1971 aa)
	megf6-2	Uncharacterized protein. (1613 aa)
	megf8-2	Uncharacterized protein. (2730 aa)
	Hspg2.L	Uncharacterized protein. (4484 aa)
	A0A1L8FYI8	Uncharacterized protein. (3016 aa)
	Lama3.L	Uncharacterized protein. (3482 aa)
	A0A1L8G142	Uncharacterized protein. (1451 aa)
	A0A1L8G2U4	Uncharacterized protein. (1736 aa)
	A0A1L8G634	Uncharacterized protein. (4386 aa)
	A0A1L8G8E4	Uncharacterized protein. (2689 aa)
	lama4	Uncharacterized protein. (1915 aa)
	lamc1	Uncharacterized protein. (1595 aa)
	A0A1L8GGH8	Laminin N-terminal domain-containing protein. (506 aa)
	lamb2	Uncharacterized protein. (1783 aa)
	A0A1L8GHT6	Uncharacterized protein. (1853 aa)
	A0A1L8GHU3	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (3232 aa)
	lamc2	Uncharacterized protein. (1170 aa)
	lamc1-2	Uncharacterized protein. (1595 aa)
	A0A1L8GN69	Uncharacterized protein. (540 aa)
	A0A1L8GPL7	Uncharacterized protein. (898 aa)
	Slc26a6.S	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (3947 aa)
	A0A1L8GPU2	Uncharacterized protein. (1852 aa)
	Lamb2.L	Uncharacterized protein. (1793 aa)
	A0A1L8GSA8	Uncharacterized protein. (1053 aa)
	A0A1L8GTZ5	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (2981 aa)
	lamb1	Uncharacterized protein. (1785 aa)
	A0A1L8GUI9	Uncharacterized protein. (630 aa)
	A0A1L8GYE7	Uncharacterized protein. (627 aa)
	Lamb4.L	Uncharacterized protein. (1808 aa)
	A0A1L8GZ58	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (2830 aa)
	lamb1-2	Uncharacterized protein. (1785 aa)
	A0A1L8H163	Uncharacterized protein. (1053 aa)
	lamb3	Uncharacterized protein. (1157 aa)
	scarf1	Uncharacterized protein. (889 aa)
	A0A1L8HDW1	Uncharacterized protein. (808 aa)
	celsr2	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (2911 aa)
	atrn	Uncharacterized protein. (1350 aa)
	Megf10.S	Uncharacterized protein. (1080 aa)
	A0A1L8HSJ5	Uncharacterized protein. (970 aa)
	Megf10.L	Uncharacterized protein. (1035 aa)
	ntn5-2	LOC100127305 protein. (601 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8ELK9	A0A1L8GHT6	A0A1L8ELK9	A0A1L8GHT6	Uncharacterized protein.	Uncharacterized protein.	0.634
A0A1L8ELK9	A0A1L8GPU2	A0A1L8ELK9	A0A1L8GPU2	Uncharacterized protein.	Uncharacterized protein.	0.634
A0A1L8ELK9	A0A1L8GSA8	A0A1L8ELK9	A0A1L8GSA8	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A1L8ELK9	A0A1L8H163	A0A1L8ELK9	A0A1L8H163	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A1L8ELK9	A0A1L8HDW1	A0A1L8ELK9	A0A1L8HDW1	Uncharacterized protein.	Uncharacterized protein.	0.769
A0A1L8ELK9	Lamb2.L	A0A1L8ELK9	A0A1L8GPU6	Uncharacterized protein.	Uncharacterized protein.	0.663
A0A1L8ELK9	Megf10.L	A0A1L8ELK9	A0A1L8I245	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A1L8ELK9	Megf10.S	A0A1L8ELK9	A0A1L8HQY9	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A1L8ELK9	lamb1	A0A1L8ELK9	A0A1L8GU36	Uncharacterized protein.	Uncharacterized protein.	0.782
A0A1L8ELK9	lamb1-2	A0A1L8ELK9	A0A1L8GZ69	Uncharacterized protein.	Uncharacterized protein.	0.782
A0A1L8ELK9	lamb2	A0A1L8ELK9	A0A1L8GHT1	Uncharacterized protein.	Uncharacterized protein.	0.663
A0A1L8ELK9	lamb3	A0A1L8ELK9	A0A1L8H6F1	Uncharacterized protein.	Uncharacterized protein.	0.807
A0A1L8ELK9	lamc1	A0A1L8ELK9	A0A1L8GG24	Uncharacterized protein.	Uncharacterized protein.	0.775
A0A1L8ELK9	lamc1-2	A0A1L8ELK9	A0A1L8GMP9	Uncharacterized protein.	Uncharacterized protein.	0.775
A0A1L8ELK9	lamc2	A0A1L8ELK9	A0A1L8GMN3	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A1L8FG40	A0A1L8FLY9	A0A1L8FG40	A0A1L8FLY9	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8FG40	Hspg2.L	A0A1L8FG40	A0A1L8FP59	Uncharacterized protein.	Uncharacterized protein.	0.929
A0A1L8FLY9	A0A1L8FG40	A0A1L8FLY9	A0A1L8FG40	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1L8FLY9	Hspg2.L	A0A1L8FLY9	A0A1L8FP59	Uncharacterized protein.	Uncharacterized protein.	0.929
A0A1L8FYI8	A0A1L8GHT6	A0A1L8FYI8	A0A1L8GHT6	Uncharacterized protein.	Uncharacterized protein.	0.634