(45 nodes) SNARE interactions in vesicular transport network (Xenopus laevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gosr2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	Stx8.S	t-SNARE coiled-coil homology domain-containing protein. (236 aa)
	gosr2-2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	stx16-2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (308 aa)
	A0A1L8F344	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (297 aa)
	vamp7	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	A0A1L8F7S0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (317 aa)
	A0A1L8FDN1	V-SNARE domain-containing protein. (161 aa)
	Vti1a.L	V-SNARE domain-containing protein. (133 aa)
	stx11	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (285 aa)
	A0A1L8GCY3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (339 aa)
	A0A1L8GGG5	V-SNARE coiled-coil homology domain-containing protein. (170 aa)
	A0A1L8GN16	V-SNARE coiled-coil homology domain-containing protein. (182 aa)
	Sec22b.S	Uncharacterized protein; Belongs to the synaptobrevin family. (221 aa)
	ykt6	Uncharacterized protein; Belongs to the synaptobrevin family. (198 aa)
	vamp5	V-SNARE coiled-coil homology domain-containing protein. (99 aa)
	Bnip1.S	Uncharacterized protein. (227 aa)
	Bnip1.L	Uncharacterized protein. (265 aa)
	vamp8	V-SNARE coiled-coil homology domain-containing protein. (107 aa)
	ykt6-2	Uncharacterized protein; Belongs to the synaptobrevin family. (198 aa)
	Vamp2.L	V-SNARE coiled-coil homology domain-containing protein. (238 aa)
	gosr1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (250 aa)
	A0A1L8H5Y6	t-SNARE coiled-coil homology domain-containing protein. (248 aa)
	vti1b	t-SNARE coiled-coil homology domain-containing protein. (221 aa)
	Stx19.L	t-SNARE coiled-coil homology domain-containing protein. (292 aa)
	A0A1L8HDF1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (288 aa)
	Vti1b.L	t-SNARE coiled-coil homology domain-containing protein. (189 aa)
	stx18	Syntaxin-18_N domain-containing protein. (343 aa)
	snap29	Uncharacterized protein. (257 aa)
	stx18-2	Syntaxin-18_N domain-containing protein. (392 aa)
	A0A310U4Y0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (288 aa)
	A0A310U8K6	t-SNARE coiled-coil homology domain-containing protein. (86 aa)
	gosr1-2	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (250 aa)
	use1	MGC131274 protein. (259 aa)
	MGC131356	MGC131356 protein. (113 aa)
	vamp8-2	LOC496218 protein. (105 aa)
	vamp1	LOC495063 protein. (101 aa)
	bet1l	Bet1l-prov protein. (111 aa)
	vamp7-2	Sybl1-prov protein; Belongs to the synaptobrevin family. (220 aa)
	stx2	Stx1b2-prov protein; Belongs to the syntaxin family. (290 aa)
	stx11-2	MGC79075 protein; Belongs to the syntaxin family. (285 aa)
	bet1	MGC84493 protein. (115 aa)
	stx19	MGC81434 protein. (292 aa)
	snap29-2	Snap29-prov protein. (257 aa)
	snap23	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (204 aa)

Your Current Organism:

Xenopus laevis

NCBI taxonomy Id: 8355
Other names: African clawed frog, Bufo laevis, X. laevis, clawed frog, common platanna, platanna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1L8F344	A0A1L8GCY3	A0A1L8F344	A0A1L8GCY3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.630
A0A1L8F344	A0A1L8GGG5	A0A1L8F344	A0A1L8GGG5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE coiled-coil homology domain-containing protein.	0.955
A0A1L8F344	A0A1L8GN16	A0A1L8F344	A0A1L8GN16	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE coiled-coil homology domain-containing protein.	0.955
A0A1L8F344	MGC131356	A0A1L8F344	Q3KPS2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	MGC131356 protein.	0.410
A0A1L8F344	Sec22b.S	A0A1L8F344	A0A1L8GNL8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.601
A0A1L8F344	Stx8.S	A0A1L8F344	A0A1L8EN61	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.474
A0A1L8F344	Vamp2.L	A0A1L8F344	A0A1L8H3D6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE coiled-coil homology domain-containing protein.	0.953
A0A1L8F344	bet1	A0A1L8F344	Q6INB4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	MGC84493 protein.	0.410
A0A1L8F344	bet1l	A0A1L8F344	Q6AZU9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Bet1l-prov protein.	0.410
A0A1L8F344	gosr2	A0A1L8F344	A0A1L8EL49	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.536
A0A1L8F344	gosr2-2	A0A1L8F344	A0A1L8ESM2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.536
A0A1L8F344	snap23	A0A1L8F344	Q8JIS7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.924
A0A1L8F344	snap29	A0A1L8F344	A0A1L8HQD7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.591
A0A1L8F344	snap29-2	A0A1L8F344	Q8AVY3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Snap29-prov protein.	0.591
A0A1L8F344	stx16-2	A0A1L8F344	A0A1L8ESZ6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.494
A0A1L8F344	vamp1	A0A1L8F344	Q5XH53	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	LOC495063 protein.	0.953
A0A1L8F344	vamp5	A0A1L8F344	A0A1L8GRY9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE coiled-coil homology domain-containing protein.	0.602
A0A1L8F344	vamp7	A0A1L8F344	A0A1L8F360	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.683
A0A1L8F344	vamp7-2	A0A1L8F344	Q6DDH7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Sybl1-prov protein; Belongs to the synaptobrevin family.	0.683
A0A1L8F344	vamp8	A0A1L8F344	A0A1L8H1L5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE coiled-coil homology domain-containing protein.	0.556