(13 nodes) Mixed, incl. Cardiac myofibril assembly, and Skeletal muscle adaptation network (Xenopus tropicalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	csrp3	Cysteine and glycine-rich protein 2. (194 aa)
	myh7	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1945 aa)
	myot	H2A histone family member J. (497 aa)
	nrap	Calcium channel, voltage-dependent, gamma subunit 4. (1692 aa)
	trim63	Uncharacterized protein. (376 aa)
	neb	Ankyrin repeat and sterile alpha motif domain-containing 1B. (6957 aa)
	actn2	DTW domain-containing protein 1. (920 aa)
	myoz2	Myozenin 2. (272 aa)
	actn3	Glutathione synthetase. (910 aa)
	ENSXETP00000031913	Ig-like domain-containing protein. (286 aa)
	myoz1	Zinc finger protein 292. (311 aa)
	tcap	DNA topoisomerase II alpha. (186 aa)
	MYPN	Myopalladin. (1320 aa)

Your Current Organism:

Xenopus tropicalis

NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSXETP00000031913	myot	ENSXETP00000031913	ENSXETP00000011213	Ig-like domain-containing protein.	H2A histone family member J.	0.418
ENSXETP00000031913	neb	ENSXETP00000031913	ENSXETP00000017614	Ig-like domain-containing protein.	Ankyrin repeat and sterile alpha motif domain-containing 1B.	0.459
MYPN	actn2	ENSXETP00000049927	ENSXETP00000027534	Myopalladin.	DTW domain-containing protein 1.	0.595
MYPN	myh7	ENSXETP00000049927	ENSXETP00000006084	Myopalladin.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.474
MYPN	neb	ENSXETP00000049927	ENSXETP00000017614	Myopalladin.	Ankyrin repeat and sterile alpha motif domain-containing 1B.	0.459
actn2	MYPN	ENSXETP00000027534	ENSXETP00000049927	DTW domain-containing protein 1.	Myopalladin.	0.595
actn2	csrp3	ENSXETP00000027534	ENSXETP00000005247	DTW domain-containing protein 1.	Cysteine and glycine-rich protein 2.	0.523
actn2	myh7	ENSXETP00000027534	ENSXETP00000006084	DTW domain-containing protein 1.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.551
actn2	myot	ENSXETP00000027534	ENSXETP00000011213	DTW domain-containing protein 1.	H2A histone family member J.	0.441
actn2	myoz1	ENSXETP00000027534	ENSXETP00000038879	DTW domain-containing protein 1.	Zinc finger protein 292.	0.802
actn2	myoz2	ENSXETP00000027534	ENSXETP00000027584	DTW domain-containing protein 1.	Myozenin 2.	0.608
actn3	csrp3	ENSXETP00000027940	ENSXETP00000005247	Glutathione synthetase.	Cysteine and glycine-rich protein 2.	0.523
actn3	myot	ENSXETP00000027940	ENSXETP00000011213	Glutathione synthetase.	H2A histone family member J.	0.441
actn3	myoz1	ENSXETP00000027940	ENSXETP00000038879	Glutathione synthetase.	Zinc finger protein 292.	0.802
actn3	myoz2	ENSXETP00000027940	ENSXETP00000027584	Glutathione synthetase.	Myozenin 2.	0.608
csrp3	actn2	ENSXETP00000005247	ENSXETP00000027534	Cysteine and glycine-rich protein 2.	DTW domain-containing protein 1.	0.523
csrp3	actn3	ENSXETP00000005247	ENSXETP00000027940	Cysteine and glycine-rich protein 2.	Glutathione synthetase.	0.523
csrp3	myot	ENSXETP00000005247	ENSXETP00000011213	Cysteine and glycine-rich protein 2.	H2A histone family member J.	0.401
csrp3	myoz2	ENSXETP00000005247	ENSXETP00000027584	Cysteine and glycine-rich protein 2.	Myozenin 2.	0.862
csrp3	neb	ENSXETP00000005247	ENSXETP00000017614	Cysteine and glycine-rich protein 2.	Ankyrin repeat and sterile alpha motif domain-containing 1B.	0.411

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