STRINGSTRING
NOD1 NOD1 ripk1 ripk1 selenof-2 selenof-2 tab1 tab1 TRAF2 TRAF2 TAB3 TAB3 LOC100489307 LOC100489307 tnfrsf1a tnfrsf1a MAP3K7 MAP3K7 traf6 traf6 tradd tradd birc2 birc2 traf1 traf1 tab2 tab2 RIPK2 RIPK2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
NOD1Nucleotide binding oligomerization domain containing 1. (891 aa)
ripk1Sequestosome 1. (669 aa)
selenof-2Selenoprotein F. (1185 aa)
tab1Allograft inflammatory factor 1-like. (650 aa)
TRAF2TNF receptor-associated factor. (481 aa)
TAB3TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (713 aa)
LOC100489307Dynein, axonemal, heavy chain 2; Belongs to the peptidase C19 family. (757 aa)
tnfrsf1aUncharacterized protein. (413 aa)
MAP3K7Mitogen-activated protein kinase kinase kinase 7. (594 aa)
traf6TNF receptor-associated factor 6; E3 ubiquitin-protein ligase that mediates ubiquitination of proteins. Adapter protein that seems to play a role in signal transduction. (558 aa)
traddEndoplasmic reticulum aminopeptidase 1. (303 aa)
birc2CREB3 regulatory factor. (639 aa)
traf1TNF receptor-associated factor. (379 aa)
tab2LOC100037849 protein. (690 aa)
RIPK2Receptor interacting serine/threonine kinase 2. (408 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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