STRINGSTRING
cirbp cirbp hnrnpa2b1 hnrnpa2b1 hnrnpa1 hnrnpa1 znf207 znf207 pick1 pick1 elavl1 elavl1 rbmx rbmx SYNCRIP SYNCRIP hnrnph1 hnrnph1 tardbp tardbp u2af1 u2af1 srpk2 srpk2 ptbp1 ptbp1 srpk1 srpk1 srsf9 srsf9 nans nans srsf6 srsf6 ptbp3 ptbp3 tra2a tra2a tra2b tra2b HNRNPUL1 HNRNPUL1 srsf2 srsf2 srsf3 srsf3 srsf7 srsf7 hnrnpll hnrnpll ewsr1 ewsr1 ilf3 ilf3 hnrnpl hnrnpl fus fus hnrnpdl hnrnpdl hnrnpd hnrnpd krt5.1 krt5.1 hnrnpu hnrnpu hnrnph3 hnrnph3 celf1 celf1 u2af2 u2af2 dhx9 dhx9 srsf12 srsf12 srsf10 srsf10 LOC100144966 LOC100144966 matr3 matr3 srsf1 srsf1 srsf5 srsf5 hnrnpc hnrnpc HNRNPM HNRNPM hnrnpk hnrnpk RALY RALY srpk3 srpk3 ENSXETP00000050479 ENSXETP00000050479 hnrnpa3 hnrnpa3 khdrbs1 khdrbs1 srsf4 srsf4 ralyl ralyl
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cirbpCold-inducible RNA-binding protein; Cold-inducible mRNA binding protein. Acts cooperatively with elavl1/elrA to stabilize AU-rich element (ARE)-containing mRNAs by binding to themm and inhibiting their deadenylation. Essential for embryonic gastrulation and neural development, acting to maintain the expression of a set of adhesion molecules, and cell movement during embryogenesis. Required for pronephros development (By similarity). (198 aa)
hnrnpa2b1Uncharacterized protein. (355 aa)
hnrnpa1Pleckstrin and Sec7 domain containing 3. (362 aa)
znf207Monocyte to macrophage differentiation-associated. (491 aa)
pick1Uncharacterized protein. (435 aa)
elavl1ELAV-like protein 1; RNA-binding protein that binds to the 3'-UTR region of mRNAs and increases their stability. Involved in embryonic stem cells (ESCs) differentiation: preferentially binds mRNAs that are not methylated by N6-methyladenosine (m6A), stabilizing them, promoting ESCs differentiation (By similarity). Binds to poly-U elements and AU-rich elements (AREs) in the 3'-UTR of target mRNAs. Acts cooperatively with cribp to stabilize AU-rich sequence (ARE)-containing mRNAs. May play a role during gastrulation. Required for the vegetal localization of vg1 mRNA (By similarity). (336 aa)
rbmxRRM domain-containing protein. (370 aa)
SYNCRIPSynaptotagmin binding cytoplasmic RNA interacting protein. (634 aa)
hnrnph1Uncharacterized protein. (485 aa)
tardbpTAR DNA-binding protein 43; Probably involved in transcriptional repression (By similarity). May play a role in the maintenance of the circadian clock periodicity. (418 aa)
u2af1Uncharacterized protein. (230 aa)
srpk2LOC100124819 protein. (637 aa)
ptbp1Uncharacterized protein. (569 aa)
srpk1SMG7 nonsense mediated mRNA decay factor. (611 aa)
srsf9Splicing factor, arginine/serine-rich 9. (225 aa)
nansPlatelet derived growth factor receptor like. (55 aa)
srsf6Uncharacterized protein. (557 aa)
ptbp3Translational activator of mitochondrially encoded cytochrome c oxidase I. (568 aa)
tra2aPleckstrin homology and RhoGEF domain containing G5. (288 aa)
tra2bRas-like without CAAX 1. (324 aa)
HNRNPUL1Heterogeneous nuclear ribonucleoprotein U like 1. (809 aa)
srsf2Splicing factor, arginine/serine-rich 2. (220 aa)
srsf3Phosphate-regulating endopeptidase homolog X-linked. (164 aa)
srsf7Spermine synthase. (234 aa)
hnrnpllATPase, Ca++ transporting, cardiac muscle, fast twitch 1. (531 aa)
ewsr1Uncharacterized protein. (673 aa)
ilf3Interleukin enhancer-binding factor 3; RNA-binding protein that plays an essential role in the biogenesis of circular RNAs (circRNAs) which are produced by back- splicing circularization of pre-mRNAs. Within the nucleus, promotes circRNAs processing by stabilizing the regulatory elements residing in the flanking introns of the circularized exons. Plays thereby a role in the back-splicing of a subset of circRNAs. As a consequence, participates in a wide range of transcriptional and post- transcriptional processes. Binds to poly-U elements and AU-rich elements (AREs) in the 3'-UTR of tar [...] (1042 aa)
hnrnplAnti-dorsalizing morphogenic protein. (565 aa)
fusUncharacterized protein. (547 aa)
hnrnpdlHeterogeneous nuclear ribonucleoprotein D-like; Acts as a transcriptional regulator. Binds DNA and RNA (By similarity). (319 aa)
hnrnpdADAM metallopeptidase domain 17. (295 aa)
krt5.1Formin-binding protein 1-like. (268 aa)
hnrnpuHeterogeneous nuclear ribonucleoprotein U (Scaffold attachment factor A). (790 aa)
hnrnph3Cell division cycle 37. (428 aa)
celf1CUGBP Elav-like family member 1; RNA-binding protein implicated in the regulation of several post-transcriptional events. May be involved in pre-mRNA alternative splicing, mRNA translation activation and stability (By similarity). Mediates the rapid and sequence-specific cytoplasmic deadenylation of EDEN-containing maternal mRNAs following fertilization. Binds to AU- rich sequences (AREs) of jun mRNA. Binds to the embryonic deadenylation element (EDEN) motif localized in the 3'-UTR of maternal mRNAs. Binds to RNA containing several repeats of the consensus sequence 5'-UGU-3'. EDEN-depe [...] (517 aa)
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (469 aa)
dhx9U4/U6 small nuclear ribonucleoprotein Prp31. (1257 aa)
srsf12Serine-arginine repressor protein (35 kDa). (253 aa)
srsf10Uncharacterized protein. (201 aa)
LOC100144966Short stature homeobox 2; Belongs to the protein kinase superfamily. (398 aa)
matr3Transcription factor 3. (892 aa)
srsf1Serine/arginine-rich splicing factor 1; May play a role in preventing exon skipping, ensuring the accuracy of splicing and regulating alternative splicing. Belongs to the splicing factor SR family. (272 aa)
srsf5Splicing factor, arginine/serine-rich 5. (272 aa)
hnrnpcCeramide synthase 1. (327 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (729 aa)
hnrnpkHeterogeneous nuclear ribonucleoprotein K. (399 aa)
RALYRALY heterogeneous nuclear ribonucleoprotein. (300 aa)
srpk3Protein kinase domain-containing protein. (677 aa)
ENSXETP00000050479RRM domain-containing protein. (100 aa)
hnrnpa3Deuterosome assembly protein 1. (383 aa)
khdrbs1Phosducin. (377 aa)
srsf4Glutamate receptor, metabotropic 6. (751 aa)
ralylRNA-binding Raly-like protein; Belongs to the RRM HNRPC family. RALY subfamily. (333 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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