STRINGSTRING
sgms2 sgms2 enpp7 enpp7 sgms1 sgms1 degs1 degs1 ugcg ugcg pak2-2 pak2-2 CERK CERK SMPD1 SMPD1 smpd3 smpd3 smpd2 smpd2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sgms2Ts translation elongation factor, mitochondrial. (365 aa)
enpp7Ectonucleotidase enpp7. (474 aa)
sgms1Solute carrier family 38 member 5. (420 aa)
degs1Sphingolipid delta(4)-desaturase DES1; Has sphingolipid-delta-4-desaturase activity. Converts D- erythro-sphinganine to D-erythro-sphingosine (E-sphing-4-enine) (By similarity). (323 aa)
ugcgCeramide glucosyltransferase; Catalyzes at the cytosolic surface of the Golgi, the initial step of the glucosylceramide-based glycosphingolipid/GSL synthetic pathway, the transfer of glucose from UDP-glucose to ceramide to produce glucosylceramide/GlcCer. Glucosylceramide is the core component of glycosphingolipids/GSLs, amphipathic molecules consisting of a ceramide lipid moiety embedded in the outer leaflet of the membrane, linked to one of hundreds of different externally oriented oligosaccharide structures. Glycosphingolipids are essential components of membrane microdomains that m [...] (394 aa)
pak2-2Uncharacterized protein. (433 aa)
CERKCeramide kinase. (572 aa)
SMPD1Sphingomyelin phosphodiesterase 1. (511 aa)
smpd3Barttin CLCNK-type chloride channel accessory beta subunit. (659 aa)
smpd2Endo/exonuclease/phosphatase domain-containing protein. (397 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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