STRINGSTRING
sptlc1 sptlc1 SPTLC3 SPTLC3 kdsr kdsr sptssb sptssb sptlc2 sptlc2 sptssa sptssa ormdl2 ormdl2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sptlc1Aminotran_1_2 domain-containing protein. (476 aa)
SPTLC3Serine palmitoyltransferase long chain base subunit 3. (562 aa)
kdsrProtocadherin 18; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (360 aa)
sptssbSerine palmitoyltransferase small subunit B; Stimulates the activity of serine palmitoyltransferase (SPT). The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference (By similarity). Belongs to the SPTSS family. SPTSSB subfamily. (80 aa)
sptlc2WD repeat domain 93. (555 aa)
sptssaSerine palmitoyltransferase small subunit A; Stimulates the activity of serine palmitoyltransferase (SPT). The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference (By similarity). Belongs to the SPTSS family. SPTSSA subfamily. (80 aa)
ormdl2ORM1-like protein; Negative regulator of sphingolipid synthesis. (153 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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