(12 nodes) RNA polymerase II, core complex network (Xenopus tropicalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Your Input:
	supt5h	Transcription elongation factor SPT5. (1078 aa)
	supt4h1	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
	polr2d-2	Polymerase (RNA) II (DNA directed) polypeptide D. (142 aa)
	polr2g	Polymerase (RNA) II (DNA directed) polypeptide G. (172 aa)
	polr2e	Polymerase (RNA) II (DNA directed) polypeptide E. (210 aa)
	polr2c	Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa. (275 aa)
	ctdnep1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1638 aa)
	polr2j	Transmembrane protein 231. (126 aa)
	polr2k	Uncharacterized protein. (68 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	polr2i	Solute carrier family 25 member 3. (133 aa)

Your Current Organism:

Xenopus tropicalis

NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ctdnep1	polr2b	ENSXETP00000021169	ENSXETP00000045246	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
ctdnep1	polr2c	ENSXETP00000021169	ENSXETP00000020055	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa.	0.996
ctdnep1	polr2d-2	ENSXETP00000021169	ENSXETP00000014247	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.954
ctdnep1	polr2e	ENSXETP00000021169	ENSXETP00000018058	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide E.	0.996
ctdnep1	polr2f	ENSXETP00000021169	ENSXETP00000041346	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.996
ctdnep1	polr2g	ENSXETP00000021169	ENSXETP00000014452	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide G.	0.996
ctdnep1	polr2i	ENSXETP00000021169	ENSXETP00000045692	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Solute carrier family 25 member 3.	0.995
ctdnep1	polr2j	ENSXETP00000021169	ENSXETP00000025690	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transmembrane protein 231.	0.916
ctdnep1	polr2k	ENSXETP00000021169	ENSXETP00000029669	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.996
ctdnep1	supt4h1	ENSXETP00000021169	ENSXETP00000005437	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.	0.882
ctdnep1	supt5h	ENSXETP00000021169	ENSXETP00000003515	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT5.	0.956
polr2b	ctdnep1	ENSXETP00000045246	ENSXETP00000021169	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
polr2b	polr2c	ENSXETP00000045246	ENSXETP00000020055	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa.	0.998
polr2b	polr2d-2	ENSXETP00000045246	ENSXETP00000014247	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.996
polr2b	polr2e	ENSXETP00000045246	ENSXETP00000018058	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide E.	0.997
polr2b	polr2f	ENSXETP00000045246	ENSXETP00000041346	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.998
polr2b	polr2g	ENSXETP00000045246	ENSXETP00000014452	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polymerase (RNA) II (DNA directed) polypeptide G.	0.996
polr2b	polr2i	ENSXETP00000045246	ENSXETP00000045692	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Solute carrier family 25 member 3.	0.996
polr2b	polr2j	ENSXETP00000045246	ENSXETP00000025690	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transmembrane protein 231.	0.996
polr2b	polr2k	ENSXETP00000045246	ENSXETP00000029669	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.996

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