STRINGSTRING
tep1 tep1 rad51c-2 rad51c-2 ERCC4 ERCC4 smc6-2 smc6-2 LOC100496941 LOC100496941 smc6 smc6 xrcc3 xrcc3 rad51d rad51d rad51c rad51c rad50 rad50 ercc1 ercc1 xrcc1 xrcc1 brca2 brca2 SMC5 SMC5 tprkb tprkb rad51 rad51 nsmce2 nsmce2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tep1Heparan sulfate-glucosamine 3-sulfotransferase 5. (2665 aa)
rad51c-2RECA_2 domain-containing protein. (121 aa)
ERCC4ERCC excision repair 4, endonuclease catalytic subunit. (930 aa)
smc6-2Spastin. (1128 aa)
LOC100496941SMC_N domain-containing protein. (1122 aa)
smc6Importin 8. (1124 aa)
xrcc3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (348 aa)
rad51dRAD51-like 3 (S. cerevisiae). (320 aa)
rad51cMalignant T-cell-amplified sequence 1. (369 aa)
rad50Toll-like receptor13. (1312 aa)
ercc1Uncharacterized protein. (302 aa)
xrcc1Uncharacterized protein. (632 aa)
brca2StAR related lipid transfer domain containing 9. (3138 aa)
SMC5Structural maintenance of chromosomes 5. (1069 aa)
tprkbTubulin polyglutamylase TTLL7; Belongs to the CGI121/TPRKB family. (173 aa)
rad51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (336 aa)
nsmce2Ring finger protein 34, E3 ubiquitin protein ligase. (203 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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