(38 nodes) Photoreceptor inner segment network (Xenopus tropicalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	shank2	Uncharacterized protein. (1829 aa)
	PHLPP2	PH domain and leucine rich repeat protein phosphatase 2. (1335 aa)
	FAM161B	FAM161 centrosomal protein B. (565 aa)
	C8orf37	Chromosome 8 open reading frame 37. (199 aa)
	rcvrn.1	F-box and WD repeat domain containing 7. (202 aa)
	sag	S-antigen; retina and pineal gland (Arrestin). (395 aa)
	opn1sw	Opn1sw protein. (349 aa)
	guk1	EF-hand calcium-binding domain 7. (233 aa)
	CROCC	Ciliary rootlet coiled-coil, rootletin. (1439 aa)
	asrgl1	Uncharacterized protein. (330 aa)
	MYO3B	Myosin IIIB. (1292 aa)
	snap25	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (206 aa)
	klhdc2	Midnolin. (788 aa)
	WHRN	Whirlin. (847 aa)
	reep6	Receptor expression-enhancing protein. (202 aa)
	LOC100486129	Nicotinamide phosphoribosyltransferase. (314 aa)
	crb1	MSS51 mitochondrial translational activator. (1341 aa)
	RD3	Retinal degeneration 3, GUCY2D regulator. (217 aa)
	rcvrn.2	Collagen type XVIII alpha 1. (193 aa)
	hdx	T-complex-associated-testis-expressed 1. (5055 aa)
	PCARE	Photoreceptor cilium actin regulator. (1164 aa)
	kifap3	Uncharacterized protein. (808 aa)
	bsg	Solute carrier family 25 member 13. (410 aa)
	CCDC66	Coiled-coil domain containing 66. (971 aa)
	gnat2	Uncharacterized protein. (354 aa)
	guca1a	LOC100124863 protein. (203 aa)
	GUCA1B	Uncharacterized protein. (206 aa)
	Rp1	Uncharacterized protein. (297 aa)
	scnn1a-2	Ubiquitin carboxyl-terminal hydrolase. (806 aa)
	ush1g	Mediator complex subunit 6. (465 aa)
	guca1al	Guanylate cyclase activator 1A (Retina). (188 aa)
	CERKL	Ceramide kinase like. (643 aa)
	crocc2	Phosphoglucomutase 2. (1978 aa)
	rho	Rhodopsin. (354 aa)
	pgghg	Protein-glucosylgalactosylhydroxylysine glucosidase. (245 aa)
	cib2	DNA-dependent protein kinase catalytic subunit-interacting protein 2. (187 aa)
	gdf5-2	Growth differentiation factor 5. (1420 aa)
	gnat1	THAP domain containing 7. (350 aa)

Your Current Organism:

Xenopus tropicalis

NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CERKL	PCARE	ENSXETP00000047114	ENSXETP00000031779	Ceramide kinase like.	Photoreceptor cilium actin regulator.	0.446
GUCA1B	PCARE	ENSXETP00000036954	ENSXETP00000031779	Uncharacterized protein.	Photoreceptor cilium actin regulator.	0.460
GUCA1B	rho	ENSXETP00000036954	ENSXETP00000048674	Uncharacterized protein.	Rhodopsin.	0.437
LOC100486129	asrgl1	ENSXETP00000022269	ENSXETP00000016563	Nicotinamide phosphoribosyltransferase.	Uncharacterized protein.	0.903
MYO3B	WHRN	ENSXETP00000018710	ENSXETP00000020253	Myosin IIIB.	Whirlin.	0.455
PCARE	CERKL	ENSXETP00000031779	ENSXETP00000047114	Photoreceptor cilium actin regulator.	Ceramide kinase like.	0.446
PCARE	GUCA1B	ENSXETP00000031779	ENSXETP00000036954	Photoreceptor cilium actin regulator.	Uncharacterized protein.	0.460
PCARE	rho	ENSXETP00000031779	ENSXETP00000048674	Photoreceptor cilium actin regulator.	Rhodopsin.	0.473
PHLPP2	gnat1	ENSXETP00000001990	ENSXETP00000053756	PH domain and leucine rich repeat protein phosphatase 2.	THAP domain containing 7.	0.403
PHLPP2	gnat2	ENSXETP00000001990	ENSXETP00000036855	PH domain and leucine rich repeat protein phosphatase 2.	Uncharacterized protein.	0.403
WHRN	MYO3B	ENSXETP00000020253	ENSXETP00000018710	Whirlin.	Myosin IIIB.	0.455
WHRN	cib2	ENSXETP00000020253	ENSXETP00000050343	Whirlin.	DNA-dependent protein kinase catalytic subunit-interacting protein 2.	0.604
WHRN	hdx	ENSXETP00000020253	ENSXETP00000031777	Whirlin.	T-complex-associated-testis-expressed 1.	0.759
WHRN	pgghg	ENSXETP00000020253	ENSXETP00000049124	Whirlin.	Protein-glucosylgalactosylhydroxylysine glucosidase.	0.455
WHRN	ush1g	ENSXETP00000020253	ENSXETP00000043184	Whirlin.	Mediator complex subunit 6.	0.759
asrgl1	LOC100486129	ENSXETP00000016563	ENSXETP00000022269	Uncharacterized protein.	Nicotinamide phosphoribosyltransferase.	0.903
cib2	WHRN	ENSXETP00000050343	ENSXETP00000020253	DNA-dependent protein kinase catalytic subunit-interacting protein 2.	Whirlin.	0.604
cib2	hdx	ENSXETP00000050343	ENSXETP00000031777	DNA-dependent protein kinase catalytic subunit-interacting protein 2.	T-complex-associated-testis-expressed 1.	0.676
cib2	ush1g	ENSXETP00000050343	ENSXETP00000043184	DNA-dependent protein kinase catalytic subunit-interacting protein 2.	Mediator complex subunit 6.	0.607
gnat1	PHLPP2	ENSXETP00000053756	ENSXETP00000001990	THAP domain containing 7.	PH domain and leucine rich repeat protein phosphatase 2.	0.403

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