STRINGSTRING
tut7 tut7 bcdin3d bcdin3d lin28b lin28b ddx5 ddx5 lin28a lin28a TENT4B TENT4B dis3l2 dis3l2 ddx17 ddx17 TRIM71 TRIM71 Zc3h12a Zc3h12a idi1-2 idi1-2 tut4 tut4 parn parn drosha drosha snd1 snd1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tut7Uncharacterized protein. (1515 aa)
bcdin3dTwinfilin actin binding protein 2. (257 aa)
lin28bCCHC-type domain-containing protein. (277 aa)
ddx5Uncharacterized protein; Belongs to the DEAD box helicase family. (618 aa)
lin28aProtein lin-28 homolog A; RNA-binding protein that inhibits processing of pre-let-7 miRNAs and regulates translation of mRNAs that control developmental timing, pluripotency and metabolism. Seems to recognize a common structural G-quartet (G4) feature in its miRNA and mRNA targets (By similarity). 'Translational enhancer' that drives specific mRNAs to polysomes and increases the efficiency of protein synthesis. Its association with the translational machinery and target mRNAs results in an increased number of initiation events per molecule of mRNA and, indirectly, in mRNA stabilization [...] (195 aa)
TENT4BTerminal nucleotidyltransferase 4B. (650 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (812 aa)
ddx17Uncharacterized protein; Belongs to the DEAD box helicase family. (609 aa)
TRIM71E3 ubiquitin-protein ligase TRIM71; E3 ubiquitin-protein ligase that cooperates with the microRNAs (miRNAs) machinery and promotes embryonic stem cells proliferation and maintenance. Binds to miRNAs and participates in post-transcriptional repression of transcripts. Required to maintain proliferation and prevent premature differentiation of neural progenitor cells during early neural development. (853 aa)
Zc3h12aC3H1-type domain-containing protein. (349 aa)
idi1-2Isopentenyl-diphosphate delta isomerase 1. (290 aa)
tut4Thymidylate synthetase. (1562 aa)
parnQKI, KH domain containing, RNA binding. (632 aa)
droshaKruppel-like factor 8. (1382 aa)
snd1Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (912 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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