STRINGSTRING
wdr60 wdr60 borcs5 borcs5 ift140 ift140 IFT88 IFT88 rhot2 rhot2 terf2 terf2 TTC21A TTC21A SUN2 SUN2 copg1 copg1 cep131 cep131 kif5a kif5a gadl1 gadl1 ift46 ift46 dync2li1 dync2li1 kif1c kif1c ift52 ift52 bloc1s1 bloc1s1 bicdl1 bicdl1 sybu sybu ift43 ift43 mgarp mgarp ap3d1 ap3d1 BBS12 BBS12 pex14 pex14 ssna1 ssna1 bloc1s2 bloc1s2 atg4d-2 atg4d-2 LOC100497171 LOC100497171 ttc30a ttc30a ctdspl2-2 ctdspl2-2 plin1-2 plin1-2 stau1 stau1 dync1i1 dync1i1 hap1 hap1 spag17 spag17 wdr19-2 wdr19-2 spg7 spg7 BICD1 BICD1 borcs7 borcs7 kcnq4-2 kcnq4-2 wdr19 wdr19 ap3b2 ap3b2 mak mak LOC100498570 LOC100498570 KIF1B KIF1B PCM1 PCM1 spg11 spg11 dpysl3 dpysl3 pafah1b1 pafah1b1 ift81 ift81 bcas4 bcas4 ift74 ift74 cln3 cln3 kif5c kif5c kif5b kif5b TRAK1 TRAK1 bicd2l bicd2l hspb11 hspb11 SUN1 SUN1 ap3m2 ap3m2 ICK ICK DYNC2H1 DYNC2H1 wdr34 wdr34 bloc1s3 bloc1s3 arl8b arl8b actr10 actr10 thumpd2-2 thumpd2-2 kif1a kif1a ift122 ift122 TTC21B TTC21B dtnbp1 dtnbp1 traf3ip1 traf3ip1 arl10b arl10b nde1 nde1 bloc1s6 bloc1s6 stau2 stau2 ift20 ift20 copg2 copg2 htt htt AP3B1 AP3B1 bicdl2 bicdl2 tctex1d2 tctex1d2 ttc26 ttc26 ift27 ift27 spast spast arl8a arl8a cnppd1-2 cnppd1-2 cfap70 cfap70 SSX2IP SSX2IP WDR35 WDR35 borcs8 borcs8 clip3 clip3 TBRG4 TBRG4 trak2 trak2 app app hspb1 hspb1 ndel1 ndel1 bloc1s4 bloc1s4 dync1i2 dync1i2 ENSXETP00000025007 ENSXETP00000025007 RHOT1 RHOT1 LOC100036665 LOC100036665
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
wdr60WD repeat domain 60. (1116 aa)
borcs5BLOC-1-related complex subunit 5; As part of a BORC-like complex may play a role in lysosomes movement and localization at the cell periphery. Associated with the cytosolic face of lysosomes, this complex may couple lysosomes to microtubule plus-end-directed kinesin motor. Belongs to the BORCS5 family. (196 aa)
ift140Uncharacterized protein. (1461 aa)
IFT88Intraflagellar transport 88. (826 aa)
rhot2Mitochondrial Rho GTPase 2; Mitochondrial GTPase involved in mitochondrial trafficking. Probably involved in control of anterograde transport of mitochondria and their subcellular distribution (By similarity). (629 aa)
terf2Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (471 aa)
TTC21ATetratricopeptide repeat domain 21A. (1312 aa)
SUN2SUN domain-containing protein. (707 aa)
copg1Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (874 aa)
cep131Prostaglandin E receptor 2. (1095 aa)
kif5aZinc finger protein 451; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1033 aa)
gadl1Acidic amino acid decarboxylase GADL1; Catalyzes the decarboxylation of L-aspartate, 3-sulfino-L- alanine (cysteine sulfinic acid), and L-cysteate to beta-alanine, hypotaurine and taurine, respectively. The preferred substrate is L- aspartate. Does not exhibit any decarboxylation activity toward glutamate. (522 aa)
ift46Taste 2 receptor member 7. (419 aa)
dync2li1Uncharacterized protein. (341 aa)
kif1cKinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1105 aa)
ift52Achaete-scute family bHLH transcription factor 2. (452 aa)
bloc1s1Biogenesis of lysosome-related organelles complex 1 subunit 1; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. May also play a role in intracellular vesicle trafficking. As part of a BORC-like complex may play a role in lysosomes movement and localization at the cell periphery. Associated with the cytosolic face of lysosomes, this complex may couple lysosomes to microtubule plus-end-directed kinesin motor; Belongs to the BLOC1S1 family. (125 aa)
bicdl1BICD family-like cargo adapter 1; Component of secretory vesicle machinery in developing neurons that acts as a regulator of neurite outgrowth; Belongs to the BICDR family. (603 aa)
sybuFAD-dependent oxidoreductase domain containing 2. (653 aa)
ift43Intraflagellar transport protein 43 homolog; As a component of IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein- coupled receptors (GPCRs), it is involved in ciliogenesis. Involved in retrograde ciliary transport along microtubules from the ciliary tip to the base. (201 aa)
mgarpAIF-MLS domain-containing protein. (560 aa)
ap3d1AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (1125 aa)
BBS12Bardet-Biedl syndrome 12. (676 aa)
pex14Pseudopodium-enriched atypical kinase 1. (362 aa)
ssna1Uncharacterized protein. (116 aa)
bloc1s2Biogenesis of lysosome-related organelles complex 1 subunit 2; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. May also play a role in intracellular vesicle trafficking. As part of a BORC-like complex may play a role in lysosomes movement and localization at the cell periphery. Associated with the cytosolic face of lysosomes, this complex may couple lysosomes to microtubule plus-end-directed kinesin motor. (147 aa)
atg4d-2Autophagy related 4D, cysteine peptidase. (561 aa)
LOC100497171Lebercilin domain-containing protein. (590 aa)
ttc30aTetratricopeptide repeat protein 30A; Required for polyglutamylation of axonemal tubulin. Plays a role in anterograde intraflagellar transport (IFT), the process by which cilia precursors are transported from the base of the cilium to the site of their incorporation at the tip; Belongs to the TTC30/dfy-1/fleer family. (651 aa)
ctdspl2-2CTD small phosphatase-like protein 2. (251 aa)
plin1-2Pepdidase_M14_N domain-containing protein. (162 aa)
stau1Uncharacterized protein. (721 aa)
dync1i1Dync1i1 protein. (627 aa)
hap1Uncharacterized protein. (938 aa)
spag17Myostatin, gene 1. (2137 aa)
wdr19-2Cyclin-dependent kinase 8. (1298 aa)
spg7Tetraspanin 31. (768 aa)
BICD1BICD cargo adaptor 1. (702 aa)
borcs7BLOC-1-related complex subunit 7; As part of a BORC-like complex may play a role in lysosomes movement and localization at the cell periphery. Associated with the cytosolic face of lysosomes, this complex may couple lysosomes to microtubule plus-end-directed kinesin motor. Belongs to the BORCS7 family. (112 aa)
kcnq4-2Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (983 aa)
wdr19Uncharacterized protein. (837 aa)
ap3b2AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1106 aa)
makDnaJ heat shock protein family (Hsp40) member C3. (658 aa)
LOC100498570Uncharacterized protein. (312 aa)
KIF1BKinesin family member 1B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1793 aa)
PCM1Pericentriolar material 1. (2051 aa)
spg11Lymphocyte specific protein 1. (1876 aa)
dpysl3Dihydropyrimidinase-related protein 3; Necessary for signaling by class 3 semaphorins and subsequent remodeling of the cytoskeleton. Plays a role in axon guidance, neuronal growth cone collapse and cell migration (By similarity). (673 aa)
pafah1b1Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration; Belongs to the WD repeat LIS1/nudF family. (414 aa)
ift81Transportin 1. (674 aa)
bcas4Uncharacterized protein. (459 aa)
ift74Intraflagellar transport 74 homolog. (601 aa)
cln3Uncharacterized protein. (579 aa)
kif5cKinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (959 aa)
kif5bKinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (962 aa)
TRAK1Uncharacterized protein. (1002 aa)
bicd2lUncharacterized protein. (764 aa)
hspb11Novel protein similar to c1orf41. (139 aa)
SUN1Sad1 and UNC84 domain containing 1. (943 aa)
ap3m2AP-3 complex subunit mu-2. (418 aa)
ICKIntestinal cell kinase. (623 aa)
DYNC2H1Dynein cytoplasmic 2 heavy chain 1. (4246 aa)
wdr34RWD domain containing 2B. (503 aa)
bloc1s3Uncharacterized protein. (188 aa)
arl8bUncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (186 aa)
actr10Uncharacterized protein; Belongs to the actin family. (421 aa)
thumpd2-2THUMP domain containing 2. (4637 aa)
kif1aNitric oxide synthase 1 adaptor protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1795 aa)
ift122Intraflagellar transport protein 122 homolog; Required for cilia formation during embryonal development. Acts as a negative regulator of Shh signaling. (1222 aa)
TTC21BTetratricopeptide repeat domain 21B. (1334 aa)
dtnbp1Nuclear receptor coactivator 1. (355 aa)
traf3ip1Uncharacterized protein. (628 aa)
arl10bUncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (205 aa)
nde1Nuclear distribution protein nudE homolog 1; Required for centrosome duplication and formation and function of the mitotic spindle; Belongs to the nudE family. (340 aa)
bloc1s6Biogenesis of lysosome-related organelles complex 1 subunit 6; Component of the BLOC-1 complex, a complex that is required for normal biogenesis of lysosome-related organelles (LRO), such as platelet dense granules and melanosomes. In concert with the AP-3 complex, the BLOC-1 complex is required to target membrane protein cargos into vesicles assembled at cell bodies for delivery into neurites and nerve terminals. The BLOC-1 complex, in association with SNARE proteins, is also proposed to be involved in neurite extension. May play a role in intracellular vesicle trafficking, particular [...] (173 aa)
stau2Double-stranded RNA-binding protein Staufen homolog 2; RNA-binding protein required for the microtubule-dependent transport of RNAs within polarized cell types. (726 aa)
ift20Intraflagellar transport protein 20 homolog; Involved in ciliary process assembly. May play a role in the trafficking of ciliary membrane proteins from the Golgi complex to the cilium. Regulates the platelet-derived growth factor receptor-alpha (PDGFRA) signaling pathway. Plays an important role in spermatogenesis, particularly spermiogenesis, when germ cells form flagella. (132 aa)
copg2Coatomer subunit gamma-2; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). (883 aa)
httDihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex). (3110 aa)
AP3B1AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1097 aa)
bicdl2BICD family-like cargo adapter 2; Belongs to the BICDR family. (493 aa)
tctex1d2Lysophosphatidic acid receptor 6-like. (124 aa)
ttc26Intraflagellar transport protein 56; Component of the intraflagellar transport (IFT) complex B required for transport of proteins in the motile cilium. Required for transport of specific ciliary cargo proteins related to motility, while it is neither required for IFT complex B assembly or motion nor for cilium assembly. Plays a key role in maintaining the integrity of the IFT complex B and the proper ciliary localization of the IFT complex B components. Essential for maintaining proper microtubule organization within the ciliary axoneme. (554 aa)
ift27Uncharacterized protein. (210 aa)
spastSpastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...] (603 aa)
arl8aADP-ribosylation factor-like protein 8A; May play a role in lysosomes motility. Alternatively, may play a role in chromosome segregation (By similarity); Belongs to the small GTPase superfamily. Arf family. (186 aa)
cnppd1-2Caspase 2. (84 aa)
cfap70Protein kinase, AMP-activated, alpha 1 catalytic subunit. (1000 aa)
SSX2IPSSX family member 2 interacting protein. (552 aa)
WDR35WD repeat-containing protein 35. (1181 aa)
borcs8Uncharacterized protein. (118 aa)
clip3ANTXR cell adhesion molecule 1. (534 aa)
TBRG4FAST kinase domain-containing protein 4; Plays a role in processing of mitochondrial RNA precursors and in stabilization of a subset of mature mitochondrial RNA species. May play a role in cell cycle progression. Belongs to the FAST kinase family. (449 aa)
trak2Putative oxidoreductase GLYR1. (906 aa)
appGeneral transcription factor IIE subunit 2. (769 aa)
hspb1Zinc finger MYM-type containing 4; Belongs to the small heat shock protein (HSP20) family. (211 aa)
ndel1Nuclear distribution protein nudE-like 1; Required for organization of the cellular microtubule array and microtubule anchoring at the centrosome. Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Positively regulates lysosome peripheral distribution and ruffled border formation in osteoclasts. (345 aa)
bloc1s4Cappuccino homolog (Mouse). (215 aa)
dync1i2Cysteine-serine-rich nuclear protein 2. (644 aa)
ENSXETP00000025007Uncharacterized protein. (63 aa)
RHOT1Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (659 aa)
LOC100036665Uncharacterized protein. (730 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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