STRINGSTRING
epcam epcam msx1 msx1 pax6 pax6 traf5 traf5 cer1 cer1 usp7-2 usp7-2 FGF5 FGF5 gsc gsc traf3ip3 traf3ip3 fgf8 fgf8 LOC100485335 LOC100485335
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
epcamEpithelial cell adhesion molecule. (312 aa)
msx1Potassium channel, two pore domain subfamily K, member 18. (275 aa)
pax6Uncharacterized protein. (456 aa)
traf5TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (539 aa)
cer1Cerberus short; Inhibits wnt, nodal/nr-1 and bmp signaling in the embryo to promote head formation and anterior neural induction. Within the endoderm, acts as an essential mediator of nodal/nr-1-induced cardiogenesis in the overlying mesoderm (By similarity). (187 aa)
usp7-2Ubiquitin specific peptidase 7 (herpes virus-associated). (316 aa)
FGF5Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (251 aa)
gscHomeobox domain-containing protein. (275 aa)
traf3ip3TRAF3 interacting protein 2. (333 aa)
fgf8Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (211 aa)
LOC100485335Poly(A) polymerase alpha. (281 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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