STRINGSTRING
rnaset2 rnaset2 pld3 pld3 neu1 neu1 nsg1 nsg1 PDGFRB PDGFRB epdr1 epdr1 FASLG FASLG nsg2 nsg2 ENSXETP00000038388 ENSXETP00000038388 scarb2 scarb2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rnaset2Uncharacterized protein; Belongs to the RNase T2 family. (228 aa)
pld35'-3' exonuclease PLD3; 5'->3' DNA exonuclease which digests single-stranded DNA (ssDNA) (By similarity). Regulates inflammatory cytokine responses via the degradation of nucleic acids, by reducing the concentration of ssDNA able to stimulate TLR9, a nucleotide-sensing receptor in collaboration with PLD4 (By similarity). May be important in myotube formation. Plays a role in lysosomal homeostasis. Involved in the regulation of endosomal protein sorting (By similarity). (503 aa)
neu1Thioredoxin like 1. (405 aa)
nsg1DDB1- and CUL4-associated factor 13. (185 aa)
PDGFRBPlatelet derived growth factor receptor beta. (1015 aa)
epdr1SART1, U4/U6.U5 tri-snRNP-associated protein 1. (220 aa)
FASLGFas ligand. (252 aa)
nsg2Major facilitator superfamily domain containing 3. (182 aa)
ENSXETP00000038388Uncharacterized protein. (101 aa)
scarb2Uncharacterized protein; Belongs to the CD36 family. (487 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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