STRINGSTRING
THBS1 THBS1 dag1 dag1 ntn4 ntn4 bcam bcam lgals1.2 lgals1.2 lgals3 lgals3 LOC100494394 LOC100494394 ric8a ric8a lgals1.3 lgals1.3 lgals1.4 lgals1.4 slit2 slit2 lgals1.1 lgals1.1 MCAM MCAM ecm1 ecm1 agrn agrn rpsa rpsa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
THBS1Thrombospondin 1. (1188 aa)
dag1Peptidase S72 domain-containing protein. (885 aa)
ntn4Alanyl aminopeptidase, membrane. (602 aa)
bcamUncharacterized protein. (606 aa)
lgals1.2Galectin. (135 aa)
lgals3Galectin. (256 aa)
LOC100494394NIMA-related kinase 4. (643 aa)
ric8aSynembryn-A; Guanine nucleotide exchange factor (GEF), which can activate some, but not all, G-alpha proteins by exchanging bound GDP for free GTP. Involved in regulation of microtubule pulling forces during mitotic movement of chromosomes by stimulating G(i)-alpha protein (By similarity). (579 aa)
lgals1.3Galectin. (135 aa)
lgals1.4Galectin. (126 aa)
slit2ATPase family, AAA domain containing 3A. (1564 aa)
lgals1.1Galectin. (134 aa)
MCAMMelanoma cell adhesion molecule. (639 aa)
ecm1O-phosphoseryl-tRNA(Sec) selenium transferase. (455 aa)
agrnSOS Ras/Rac guanine nucleotide exchange factor 1. (2105 aa)
rpsa40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (319 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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