STRINGSTRING
lamp1 lamp1 cln3 cln3 lrrk2 lrrk2 lamp2 lamp2 pik3c3 pik3c3 sqstm1 sqstm1 plekhm1 plekhm1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lamp1Uncharacterized protein. (429 aa)
cln3Uncharacterized protein. (579 aa)
lrrk2Hes family bHLH transcription factor 2. (2514 aa)
lamp2Uncharacterized protein. (409 aa)
pik3c3Phosphatidylinositol 3-kinase catalytic subunit type 3. (912 aa)
sqstm1Uncharacterized protein. (452 aa)
plekhm1Protein phosphatase 3, catalytic subunit, alpha isozyme. (1061 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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