STRINGSTRING
cltc cltc rab11a rab11a vps35 vps35 cltcl1 cltcl1 mal2 mal2 USO1 USO1 rab11b.2 rab11b.2 rab11b.1 rab11b.1 lrpap1 lrpap1 mfsd2a mfsd2a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cltcClathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1692 aa)
rab11aRAB11A, member RAS oncogene family. (216 aa)
vps35Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (796 aa)
cltcl1Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1693 aa)
mal2MARVEL domain-containing protein. (174 aa)
USO1USO1 vesicle transport factor. (966 aa)
rab11b.2Human immunodeficiency virus type I enhancer binding protein 3. (218 aa)
rab11b.1Leucine rich repeat containing 8 VRAC subunit A. (221 aa)
lrpap1PC-esterase domain containing 1A. (371 aa)
mfsd2aSodium-dependent lysophosphatidylcholine symporter 1; Sodium-dependent lysophosphatidylcholine (LPC) symporter, which plays an essential role for blood-brain barrier formation and function. Specifically expressed in endothelium of the blood-brain barrier of micro-vessels and transports LPC into the brain. Transport of LPC is essential because it constitutes the major mechanism by which docosahexaenoic acid (DHA), an omega-3 fatty acid that is essential for normal brain growth and cognitive function, enters the brain. Transports LPC carrying long-chain fatty acids such LPC oleate and LP [...] (527 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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