STRINGSTRING
igf2bp3 igf2bp3 shmt2 shmt2 ilf3 ilf3 shmt1 shmt1 cct5 cct5 DHX36 DHX36 rps14 rps14 larp6-like.1 larp6-like.1 larp1 larp1 mrps11 mrps11 rsl1d1 rsl1d1 larp6 larp6 utp23 utp23 gnl3 gnl3 fmr1 fmr1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
igf2bp3Uncharacterized protein. (600 aa)
shmt2Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (514 aa)
ilf3Interleukin enhancer-binding factor 3; RNA-binding protein that plays an essential role in the biogenesis of circular RNAs (circRNAs) which are produced by back- splicing circularization of pre-mRNAs. Within the nucleus, promotes circRNAs processing by stabilizing the regulatory elements residing in the flanking introns of the circularized exons. Plays thereby a role in the back-splicing of a subset of circRNAs. As a consequence, participates in a wide range of transcriptional and post- transcriptional processes. Binds to poly-U elements and AU-rich elements (AREs) in the 3'-UTR of tar [...] (1042 aa)
shmt1Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (485 aa)
cct5Chaperonin containing TCP1, subunit 5 (Epsilon). (541 aa)
DHX36DEAH-box helicase 36. (1006 aa)
rps14Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
larp6-like.1Acheron. (481 aa)
larp1HTH La-type RNA-binding domain-containing protein. (1022 aa)
mrps11Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (195 aa)
rsl1d1Uncharacterized protein. (341 aa)
larp6SHC SH2-domain binding protein 1. (793 aa)
utp23Uncharacterized protein. (246 aa)
gnl3Receptor tyrosine kinase like orphan receptor 2. (472 aa)
fmr1Synaptic functional regulator FMR1; Multifunctional polyribosome-associated RNA-binding protein that plays a central role in neuronal development and synaptic plasticity through the regulation of alternative mRNA splicing, mRNA stability, mRNA dendritic transport and postsynaptic local protein synthesis of a subset of mRNAs. Binds poly(G) and poly(U), and to a lower extent poly(A) and poly(C). ECO:0000250|UniProtKB:P51113, ECO:0000250|UniProtKB:Q06787. (590 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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