STRINGSTRING
vegfa vegfa AHI1 AHI1 synj1 synj1 SERPINE1 SERPINE1 vtn vtn HIP1 HIP1 syk syk pick1-2 pick1-2 PCSK9 PCSK9 ppt1 ppt1 faim2-2 faim2-2 sgip1 sgip1 scyl2 scyl2 tbc1d5 tbc1d5 dtnbp1 dtnbp1 gdf5-2 gdf5-2 grem1 grem1 DAB2 DAB2 fmr1 fmr1 cd63 cd63 apln apln apela apela ldlrap1 ldlrap1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vegfaGID complex subunit 8; Belongs to the PDGF/VEGF growth factor family. (311 aa)
AHI1Abelson helper integration site 1. (747 aa)
synj1Stathmin 3. (1548 aa)
SERPINE1Serpin family E member 1; Belongs to the serpin family. (449 aa)
vtnSMB domain-containing protein. (460 aa)
HIP1Huntingtin interacting protein 1. (737 aa)
sykTyrosine-protein kinase. (611 aa)
pick1-2Uncharacterized protein. (421 aa)
PCSK9Proprotein convertase subtilisin/kexin type 9. (684 aa)
ppt1Uncharacterized protein. (305 aa)
faim2-2Clusterin; Belongs to the clusterin family. (435 aa)
sgip1Semaphorin 5B. (734 aa)
scyl2GATA zinc finger domain containing 2B. (930 aa)
tbc1d5Protein S. (773 aa)
dtnbp1Nuclear receptor coactivator 1. (355 aa)
gdf5-2Growth differentiation factor 5. (1420 aa)
grem1Gremlin. (182 aa)
DAB2DAB adaptor protein 2. (820 aa)
fmr1Synaptic functional regulator FMR1; Multifunctional polyribosome-associated RNA-binding protein that plays a central role in neuronal development and synaptic plasticity through the regulation of alternative mRNA splicing, mRNA stability, mRNA dendritic transport and postsynaptic local protein synthesis of a subset of mRNAs. Binds poly(G) and poly(U), and to a lower extent poly(A) and poly(C). ECO:0000250|UniProtKB:P51113, ECO:0000250|UniProtKB:Q06787. (590 aa)
cd63Tetraspanin. (246 aa)
aplnLOC100135238 protein. (76 aa)
apelaEndoplasmic reticulum-Golgi intermediate compartment protein 3. (54 aa)
ldlrap1Zinc finger protein 238, gene 2. (309 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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