STRINGSTRING
met met HGF HGF fgf7 fgf7 lgals3 lgals3 VEGFD VEGFD VEGFC VEGFC scg2 scg2 tsc2 tsc2 pdgfb-2 pdgfb-2 SCRIB SCRIB vegfa vegfa colec10 colec10 vegfb vegfb alkbh1 alkbh1 lrrc1 lrrc1 cxcl11 cxcl11 cxcl9 cxcl9
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
metUTP6 small subunit processome component. (1402 aa)
HGFHepatocyte growth factor; Potent mitogen for mature parenchymal hepatocyte cells, seems to be a hepatotrophic factor, and acts as a growth factor for a broad spectrum of tissues and cell types. Activating ligand for the receptor tyrosine kinase MET by binding to it and promoting its dimerization. Belongs to the peptidase S1 family. Plasminogen subfamily. (710 aa)
fgf7Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (194 aa)
lgals3Galectin. (256 aa)
VEGFDVascular endothelial growth factor D; Belongs to the PDGF/VEGF growth factor family. (333 aa)
VEGFCVascular endothelial growth factor C. (407 aa)
scg2BRX1, biogenesis of ribosomes. (624 aa)
tsc2Mannosidase, alpha, class 1B, member 1. (1798 aa)
pdgfb-2Frizzled related protein; Belongs to the PDGF/VEGF growth factor family. (240 aa)
SCRIBScribble planar cell polarity protein. (945 aa)
vegfaGID complex subunit 8; Belongs to the PDGF/VEGF growth factor family. (311 aa)
colec10Collectin-10; Lectin that binds to various sugars: galactose > mannose = fucose > N-acetylglucosamine > N-acetylgalactosamine; Belongs to the COLEC10/COLEC11 family. (275 aa)
vegfbBradykinin receptor B2. (251 aa)
alkbh1Solute carrier family 35 member D3. (398 aa)
lrrc1Uncharacterized protein. (508 aa)
cxcl11Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family. (119 aa)
cxcl9Cyclin-dependent kinase 2 associated protein 2. (96 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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