STRINGSTRING
crb1 crb1 rdh8 rdh8 NYX NYX PDE6B PDE6B cryba4 cryba4 glrb glrb LOC100489435 LOC100489435 prph2 prph2 TH TH LOC100496420 LOC100496420 L7MUH4_XENTR L7MUH4_XENTR SLC24A1 SLC24A1 rcvrn.1 rcvrn.1 gjc1 gjc1 LOC108648773 LOC108648773 vsx1 vsx1 LOC100489056 LOC100489056 rpgrip1 rpgrip1 atf6 atf6 opn1sw opn1sw cryaa cryaa rrh rrh LOC100491124 LOC100491124 Crygdl.23 Crygdl.23 rgs9bp rgs9bp pde6h pde6h crygn crygn cabp1 cabp1 mfrp mfrp LOC100489375 LOC100489375 opa1 opa1 opn5.2 opn5.2 opn4 opn4 MYO3B MYO3B crybb1 crybb1 OPN5 OPN5 grk7 grk7 cabp4 cabp4 klhdc2 klhdc2 LOC100494762 LOC100494762 nob1 nob1 WHRN WHRN LOC100489221 LOC100489221 th2 th2 LOC100498474 LOC100498474 rgr rgr pde6g pde6g ENSXETP00000021307 ENSXETP00000021307 wfs1 wfs1 VSX2 VSX2 reep6 reep6 GUCY2F GUCY2F cacnb4 cacnb4 sox6 sox6 pdc pdc cln5 cln5 RD3 RD3 lman1l lman1l ADGRV1 ADGRV1 crybb2 crybb2 LOC100489684 LOC100489684 cryga.3 cryga.3 hpdl-2 hpdl-2 grip1-2 grip1-2 cln6 cln6 BFSP2 BFSP2 slitrk6 slitrk6 rorb rorb rcvrn.2 rcvrn.2 hdx hdx mfrp-2 mfrp-2 lrit3 lrit3 LOC100491295 LOC100491295 slc24a2 slc24a2 rabggta-2 rabggta-2 VAX2 VAX2 NR2E1 NR2E1 pde6a pde6a UNC119 UNC119 gnat2 gnat2 guca1a guca1a GUCA1B GUCA1B GUCA1C GUCA1C LOC100485437 LOC100485437 LOC100491569 LOC100491569 LOC100485989 LOC100485989 opn1lw opn1lw pdxk-2 pdxk-2 Rp1 Rp1 cln8 cln8 opa3 opa3 amacr-2 amacr-2 epas1 epas1 LAMB1 LAMB1 ush1g ush1g guca1al guca1al pde6d pde6d gucy2d gucy2d Cabp2 Cabp2 pde6c pde6c lum lum cnga3 cnga3 pdcl pdcl rho rho pgghg pgghg gpr179 gpr179 CRYBA2 CRYBA2 rlbp1 rlbp1 LOC100124812 LOC100124812 bbs2 bbs2 nxnl2 nxnl2 LAMB2 LAMB2 nodal-2 nodal-2 cryba1 cryba1 GJD2 GJD2 slc4a10 slc4a10 crygbl.1 crygbl.1 gnat1 gnat1 spata5l1 spata5l1 cngb3 cngb3 cep41 cep41
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
crb1MSS51 mitochondrial translational activator. (1341 aa)
rdh8Cryptochrome circadian regulator 2. (203 aa)
NYXNyctalopin. (447 aa)
PDE6BPhosphodiesterase. (847 aa)
cryba4F-box and leucine-rich repeat protein 4; Belongs to the beta/gamma-crystallin family. (196 aa)
glrbGlycine receptor, beta; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (497 aa)
LOC100489435Guanylate cyclase. (1103 aa)
prph2GA binding protein transcription factor subunit beta 2. (349 aa)
THTyrosine hydroxylase. (478 aa)
LOC100496420Metabolism of cobalamin associated D. (345 aa)
L7MUH4_XENTRUncharacterized protein; Belongs to the beta/gamma-crystallin family. (2303 aa)
SLC24A1Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (724 aa)
rcvrn.1F-box and WD repeat domain containing 7. (202 aa)
gjc1Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (392 aa)
LOC108648773NFKB activating protein; Belongs to the beta/gamma-crystallin family. (177 aa)
vsx1Semaphorin 3F like. (344 aa)
LOC100489056Vertebrate ancient long opsin. (382 aa)
rpgrip1Myelin regulatory factor. (1279 aa)
atf6BZIP domain-containing protein. (644 aa)
opn1swOpn1sw protein. (349 aa)
cryaaSHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (171 aa)
rrhCalcium/calmodulin dependent protein kinase (CaM kinase) II delta; Belongs to the G-protein coupled receptor 1 family. (351 aa)
LOC100491124Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (175 aa)
Crygdl.23Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (175 aa)
rgs9bpFGFR1 oncogene partner. (236 aa)
pde6hUncharacterized protein. (113 aa)
crygnGamma-crystallin N; Crystallins are the dominant structural components of the vertebrate eye lens. (183 aa)
cabp1Uncharacterized protein. (245 aa)
mfrpMetaxin 3. (562 aa)
LOC100489375Uncharacterized protein. (364 aa)
opa1Cyclin-dependent kinase inhibitor 2B; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (1010 aa)
opn5.2G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (353 aa)
opn4MCF.2 cell line derived transforming sequence-like. (531 aa)
MYO3BMyosin IIIB. (1292 aa)
crybb1Platelet derived growth factor subunit A; Belongs to the beta/gamma-crystallin family. (227 aa)
OPN5Opsin 5; Belongs to the G-protein coupled receptor 1 family. (345 aa)
grk7G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily. (551 aa)
cabp4Uncharacterized protein. (263 aa)
klhdc2Midnolin. (788 aa)
LOC100494762Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (300 aa)
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (436 aa)
WHRNWhirlin. (847 aa)
LOC100489221Uncharacterized protein. (251 aa)
th2Uncharacterized protein. (434 aa)
LOC100498474Uncharacterized protein. (264 aa)
rgrHes family bHLH transcription factor 5; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (295 aa)
pde6gLOC100124827 protein. (87 aa)
ENSXETP00000021307Uncharacterized protein. (61 aa)
wfs1LOC100127642 protein. (863 aa)
VSX2Visual system homeobox 2. (377 aa)
reep6Receptor expression-enhancing protein. (202 aa)
GUCY2FGuanylate cyclase. (1133 aa)
cacnb4SH3 domain-containing protein. (550 aa)
sox6Transcription factor Sox-6; Transcriptional activator. Binds specifically to the DNA sequence 5'-AACAAT-3'. Plays a key role in several developmental processes, including neurogenesis and skeleton formation (By similarity). (804 aa)
pdcLDL receptor related protein 6. (287 aa)
cln5Fibroblast growth factor 7. (333 aa)
RD3Retinal degeneration 3, GUCY2D regulator. (217 aa)
lman1lLectin, mannose-binding, 1 like. (158 aa)
ADGRV1Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family. (6137 aa)
crybb2Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (204 aa)
LOC100489684Sp4 transcription factor; Belongs to the beta/gamma-crystallin family. (175 aa)
cryga.3Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (174 aa)
hpdl-2Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (181 aa)
grip1-2Glutamate receptor interacting protein 1. (161 aa)
cln6Endothelin receptor type A. (301 aa)
BFSP2Beaded filament structural protein 2; Belongs to the intermediate filament family. (432 aa)
slitrk6Fibromodulin. (826 aa)
rorbRadial spoke head protein 9 homolog. (505 aa)
rcvrn.2Collagen type XVIII alpha 1. (193 aa)
hdxT-complex-associated-testis-expressed 1. (5055 aa)
mfrp-2SLAIN motif-containing protein 1. (368 aa)
lrit3Guanylate cyclase activator 1A like. (654 aa)
LOC100491295Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (175 aa)
slc24a2ADNP homeobox 2; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (657 aa)
rabggta-2Rab geranylgeranyltransferase subunit alpha; Belongs to the beta/gamma-crystallin family. (175 aa)
VAX2Ventral anterior homeobox 2. (299 aa)
NR2E1Nuclear receptor subfamily 2 group E member 1. (397 aa)
pde6aPhosphodiesterase. (866 aa)
UNC119Unc-119 lipid binding chaperone. (254 aa)
gnat2Uncharacterized protein. (354 aa)
guca1aLOC100124863 protein. (203 aa)
GUCA1BUncharacterized protein. (206 aa)
GUCA1CGuanylate cyclase activator 1C. (200 aa)
LOC100485437G_PROTEIN_RECEP_F1_2 domain-containing protein. (536 aa)
LOC100491569Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (342 aa)
LOC100485989G_PROTEIN_RECEP_F1_2 domain-containing protein. (362 aa)
opn1lwOpn1lw protein. (365 aa)
pdxk-2Adenosylhomocysteinase. (1680 aa)
Rp1Uncharacterized protein. (297 aa)
cln8Actin related protein 2/3 complex subunit 3. (298 aa)
opa3ATP binding cassette subfamily B member 1. (151 aa)
amacr-2Alpha-methylacyl-CoA racemase. (638 aa)
epas1Uncharacterized protein. (873 aa)
LAMB1Laminin subunit beta 1. (1808 aa)
ush1gMediator complex subunit 6. (465 aa)
guca1alGuanylate cyclase activator 1A (Retina). (188 aa)
pde6dRetinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...] (170 aa)
gucy2dGuanylate cyclase. (1081 aa)
Cabp2Uncharacterized protein. (166 aa)
pde6cPhosphodiesterase. (868 aa)
lumDecapping enzyme, scavenger. (370 aa)
cnga3Nuclear transcription factor Y subunit beta. (735 aa)
pdclThioredoxin reductase-like selenoprotein T. (293 aa)
rhoRhodopsin. (354 aa)
pgghgProtein-glucosylgalactosylhydroxylysine glucosidase. (245 aa)
gpr179Ribosome production factor 2 homolog. (1489 aa)
CRYBA2Crystallin beta A2; Belongs to the beta/gamma-crystallin family. (210 aa)
rlbp1CRAL-TRIO domain-containing protein. (326 aa)
LOC100124812Ubiquitin carboxyl-terminal hydrolase MINDY-3; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (323 aa)
bbs2Bardet-Biedl syndrome 2 protein homolog. (749 aa)
nxnl2Bone morphogenetic protein receptor type 1B. (156 aa)
LAMB2Laminin subunit beta 2. (1793 aa)
nodal-2Nodal homolog 3-C; Exhibits mesoderm-dorsalizing activity and neural-inducing activity, but lacks mesoderm-inducing activity. Regulates the expression of specific mesodermal and neural genes. Induces convergent extension movements at the embryonic midline by activating the fgf signaling pathway to induce t/bra expression in the organizer region. Acts with wnt11 to induce Spemann organizer cells and induce axis formation (By similarity). The unprocessed protein antagonizes bmp- signaling; Belongs to the TGF-beta family. (403 aa)
cryba1Uncharacterized protein; Belongs to the beta/gamma-crystallin family. (198 aa)
GJD2Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (304 aa)
slc4a10Anion exchange protein. (1187 aa)
crygbl.1Discs, large homolog-associated protein 4; Belongs to the beta/gamma-crystallin family. (175 aa)
gnat1THAP domain containing 7. (350 aa)
spata5l1Spermatogenesis-associated protein 5-like protein 1. (593 aa)
cngb3SREBF chaperone. (566 aa)
cep41Centrosomal protein of 41 kDa; Required during ciliogenesis for tubulin glutamylation in cilium. Probably acts by participating in the transport of tubulin polyglutamylases between the basal body and the cilium (By similarity). Belongs to the CEP41 family. (370 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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