STRINGSTRING
sox11 sox11 nrl nrl RPGRIP1L RPGRIP1L rpgrip1 rpgrip1 mtmr6-2 mtmr6-2 cabp4 cabp4 SOX8 SOX8 TTC8 TTC8 rorb rorb crb2 crb2 Rp1 Rp1 pde6c pde6c THY1 THY1 ntrk2 ntrk2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sox11Transcription factor Sox-11; Binds to the DNA sequence 5'-AACAAT-3'. Plays a role together with nlk in neural induction during early embryogenesis (By similarity). (383 aa)
nrlGolgi brefeldin A resistant guanine nucleotide exchange factor 1. (289 aa)
RPGRIP1LRPGRIP1 like. (1266 aa)
rpgrip1Myelin regulatory factor. (1279 aa)
mtmr6-2Myotubularin related protein 6. (673 aa)
cabp4Uncharacterized protein. (263 aa)
SOX8SRY-box transcription factor 8. (466 aa)
TTC8Tetratricopeptide repeat domain 8. (516 aa)
rorbRadial spoke head protein 9 homolog. (505 aa)
crb2EMI domain containing 1. (1456 aa)
Rp1Uncharacterized protein. (297 aa)
pde6cPhosphodiesterase. (868 aa)
THY1Thy-1 cell surface antigen. (136 aa)
ntrk2Tyrosine-protein kinase receptor. (821 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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