STRINGSTRING
rab3gap1 rab3gap1 ep300 ep300 msx1 msx1 ANKRD11 ANKRD11 lef1 lef1 zfand5 zfand5 NIPBL NIPBL srf srf crispld2 crispld2 mkks mkks aldh1a3 aldh1a3 tgfb1 tgfb1 csrnp1 csrnp1 dlx5 dlx5 dkk1 dkk1 SGPL1 SGPL1 BRAF BRAF LOC100494987 LOC100494987 LOC101732240 LOC101732240 STRA6 STRA6 ednra ednra pax9 pax9 hoxb3 hoxb3 CRISPLD1 CRISPLD1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rab3gap1Ribosomal protein S20. (914 aa)
ep300Suv3 like RNA helicase. (2493 aa)
msx1Potassium channel, two pore domain subfamily K, member 18. (275 aa)
ANKRD11Ankyrin repeat domain 11. (2761 aa)
lef1HMG box domain-containing protein. (415 aa)
zfand5High mobility group protein 20A. (211 aa)
NIPBLNipped-B protein. (2938 aa)
srfHydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7. (359 aa)
crispld2Cysteine-rich secretory protein LCCL domain-containing 2; Promotes matrix assembly; Belongs to the CRISP family. (503 aa)
mkksNeuronal calcium sensor 1. (611 aa)
aldh1a3Protein phosphatase 1 regulatory subunit 7; Belongs to the aldehyde dehydrogenase family. (512 aa)
tgfb1Transforming growth factor beta; Belongs to the TGF-beta family. (387 aa)
csrnp1AXIN1 up-regulated 1. (574 aa)
dlx5Nuclear factor of activated T cells 3. (298 aa)
dkk1Dickkopf 1. (257 aa)
SGPL1Sphingosine-1-phosphate lyase 1. (573 aa)
BRAFB-Raf proto-oncogene, serine/threonine kinase. (908 aa)
LOC100494987Uncharacterized protein. (485 aa)
LOC101732240Poly [ADP-ribose] polymerase. (492 aa)
STRA6Stimulated by retinoic acid 6. (637 aa)
ednraEndothelin receptor type A; Belongs to the G-protein coupled receptor 1 family. (414 aa)
pax9Aldehyde dehydrogenase 1 family member A1. (360 aa)
hoxb3Homeo box B3. (386 aa)
CRISPLD1Cysteine rich secretory protein LCCL domain containing 1. (508 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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