STRINGSTRING
gas1 gas1 scfd1 scfd1 rnf139 rnf139 sar1b sar1b preb preb sorl1 sorl1 pgap1 pgap1 lrrk2 lrrk2 tbc1d20.1 tbc1d20.1 yipf5 yipf5 stx18 stx18 sar1a sar1a rint1 rint1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gas1Uncharacterized protein. (289 aa)
scfd1Interleukin 17B; Belongs to the STXBP/unc-18/SEC1 family. (635 aa)
rnf139Ring finger protein 139. (663 aa)
sar1bMGC108053 protein; Belongs to the small GTPase superfamily. SAR1 family. (198 aa)
prebRho GTPase activating protein 18. (296 aa)
sorl1Tubulin tyrosine ligase like 4. (2146 aa)
pgap1GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi. (906 aa)
lrrk2Hes family bHLH transcription factor 2. (2514 aa)
tbc1d20.1Rab-GAP TBC domain-containing protein. (382 aa)
yipf5Protein YIPF5; Plays a role in transport between endoplasmic reticulum and Golgi; Belongs to the YIP1 family. (259 aa)
stx18Ribonucleotide reductase M2 B (TP53 inducible). (371 aa)
sar1aLectin, galactoside-binding, soluble, 4, gene 2; Belongs to the small GTPase superfamily. SAR1 family. (198 aa)
rint16-phosphogluconolactonase. (785 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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