STRINGSTRING
dctn5 dctn5 sufu sufu ARID2 ARID2 SMAD6 SMAD6 apela apela prdm1 prdm1 srf srf tab1 tab1 ZBTB14 ZBTB14 apln apln PDGFRB PDGFRB sec24b sec24b setd2 setd2 CNTRL CNTRL aplnr aplnr vegfb vegfb rtn4rl1-3 rtn4rl1-3 hand2 hand2 tgfbr1 tgfbr1 DYNC2H1 DYNC2H1 PLXND1 PLXND1 gata6 gata6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dctn5Dynactin 4. (182 aa)
sufuSuppressor of fused homolog. (506 aa)
ARID2AT-rich interaction domain 2. (1816 aa)
SMAD6Mothers against decapentaplegic homolog. (352 aa)
apelaEndoplasmic reticulum-Golgi intermediate compartment protein 3. (54 aa)
prdm1ChaC, cation transport regulator homolog 2. (784 aa)
srfHydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7. (359 aa)
tab1Allograft inflammatory factor 1-like. (650 aa)
ZBTB14Zinc finger and BTB domain containing 14. (452 aa)
aplnLOC100135238 protein. (76 aa)
PDGFRBPlatelet derived growth factor receptor beta. (1015 aa)
sec24bCaM kinase-like vesicle-associated. (1103 aa)
setd2H2A histone family member Y. (2971 aa)
CNTRLCentriolin. (2247 aa)
aplnrApelin receptor; Receptor for apelin receptor early endogenous ligand (apela) and apelin (apln) hormones coupled to G proteins that inhibit adenylate cyclase activity. Plays a key role in early development such as gastrulation, blood vessels formation and heart morphogenesis by acting as a receptor for apela hormone, promoting endoderm and mesendoderm cell migration and regulating the migration of cells fated to become myocardial progenitors, respectively. Promotes angioblast migration toward the embryonic midline, i.e. the position of the future vessel formation, during vasculogenesis [...] (363 aa)
vegfbBradykinin receptor B2. (251 aa)
rtn4rl1-3Reticulon 4 receptor-like 1. (414 aa)
hand2Hand2 protein. (210 aa)
tgfbr1Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (501 aa)
DYNC2H1Dynein cytoplasmic 2 heavy chain 1. (4246 aa)
PLXND1Plexin D1. (1867 aa)
gata6Zinc-finger transcription factor Gata6. (524 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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