STRINGSTRING
usp18 usp18 septin2-2 septin2-2 cops4 cops4 mindy4 mindy4 otulinl otulinl krt18.1 krt18.1 otud3 otud3 cpm-2 cpm-2 LOC101730522 LOC101730522 wdr48 wdr48 taf4 taf4 supt3h supt3h usp5 usp5 usp10 usp10 bap1 bap1 usp42 usp42 OTUD7B OTUD7B josd2 josd2 usp2 usp2 USP54 USP54 otud4 otud4 chia chia cops5 cops5 ncln-2 ncln-2 TAF6 TAF6 usp13 usp13 USP12 USP12 stambpl1 stambpl1 F7AA28_XENTR F7AA28_XENTR sgf29 sgf29 mysm1 mysm1 usp15 usp15 ENSXETP00000007878 ENSXETP00000007878 usp7 usp7 LOC101735032 LOC101735032 taf5 taf5 dhx58-2 dhx58-2 sf3b3 sf3b3 LOC101731896 LOC101731896 UCHL5 UCHL5 uchl1 uchl1 USP35 USP35 otud6b otud6b USP8 USP8 cops2 cops2 usp32 usp32 psmd14 psmd14 vcpip1 vcpip1 senp8 senp8 cops8 cops8 Zc3h12a Zc3h12a idi1-2 idi1-2 usp40 usp40 map1lc3a-3 map1lc3a-3 abraxas1 abraxas1 usp3 usp3 ENSXETP00000050419 ENSXETP00000050419 cops6 cops6 sf3b5 sf3b5 OTUD1 OTUD1 USP37 USP37 stambp stambp usp20 usp20 cyld cyld usp47 usp47 usp19 usp19 USP4 USP4 usp24 usp24 usp25 usp25 tlk2 tlk2 usp33 usp33 usp43 usp43 ATXN7L1 ATXN7L1 usp14 usp14 otub2 otub2 TAF6L TAF6L usp34 usp34 ENSXETP00000044680 ENSXETP00000044680 mindy4b mindy4b COPS7B COPS7B usp12b usp12b atxn3 atxn3 uspl1 uspl1 OTUD7A OTUD7A ncoa6-2 ncoa6-2 TRRAP TRRAP babam1 babam1 F7BLJ8_XENTR F7BLJ8_XENTR scnn1a-2 scnn1a-2 uimc1 uimc1 USP31 USP31 camlg-2 camlg-2 abraxas2 abraxas2 zranb1 zranb1 taf5l taf5l ENSXETP00000039203 ENSXETP00000039203 SPATA2 SPATA2 desi2l desi2l senp5 senp5 senp7 senp7 usp30 usp30 USP38 USP38 usp44 usp44 usp39 usp39 YOD1 YOD1 OTUB1 OTUB1 LOC101733270 LOC101733270 pgpep1-2 pgpep1-2 usp16 usp16 rpl7l1 rpl7l1 desi1 desi1 usp1 usp1 DESI2 DESI2 usp22 usp22 brcc3 brcc3 mindy2 mindy2 LOC100489307 LOC100489307 ENSXETP00000028155 ENSXETP00000028155 usp53 usp53 TAF2 TAF2 ENSXETP00000027220 ENSXETP00000027220 eif3f eif3f ENSXETP00000025603 ENSXETP00000025603 atxn7 atxn7 gps1 gps1 MINDY1 MINDY1 taf12 taf12 txlna-2 txlna-2 eny2 eny2 supt7l supt7l usp48 usp48 usp28 usp28 usp21 usp21 josd1 josd1 mindy3 mindy3 ENSXETP00000021535 ENSXETP00000021535 OTULIN OTULIN
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
usp18USP domain-containing protein; Belongs to the peptidase C19 family. (363 aa)
septin2-2Septin 2. (1118 aa)
cops4Hematopoietically-expressed homeobox protein hhex. (417 aa)
mindy4Probable ubiquitin carboxyl-terminal hydrolase MINDY-4; Probable hydrolase that can remove 'Lys-48'-linked conjugated ubiquitin from proteins; Belongs to the MINDY deubiquitinase family. FAM188 subfamily. (746 aa)
otulinlMethylcytosine dioxygenase tet3. (290 aa)
krt18.1Keratin, type I cytoskeletal 18; When phosphorylated, plays a role in filament reorganization. (429 aa)
otud3H2A histone family member V. (407 aa)
cpm-2Carboxypeptidase M. (1325 aa)
LOC101730522ULP_PROTEASE domain-containing protein. (401 aa)
wdr48WD repeat-containing protein 48; Regulator of deubiquitinating complexes. Acts as a strong activator of USP1 and USP46. Enhances the USP1-mediated deubiquitination of FANCD2; USP1 being almost inactive by itself. Also activates deubiquitinating activity of complexes containing USP12. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate. May play a role in vesicular transport or membrane fusion events necessary for transport to lysosomes. (709 aa)
taf4Centrin 4. (1045 aa)
supt3hUncharacterized protein. (414 aa)
usp5Ubiquitin carboxyl-terminal hydrolase. (855 aa)
usp10Ubiquitin carboxyl-terminal hydrolase 10; Hydrolase that can remove conjugated ubiquitin from target proteins such as p53/tp53. Acts as an essential regulator of p53/tp53 stability: in unstressed cells, specifically deubiquitinates p53/tp53 in the cytoplasm, leading to counteracts MDM2 action and stabilize p53/tp53. Following DNA damage, translocates to the nucleus and deubiquitinates p53/tp53, leading to regulate the p53/TP53-dependent DNA damage response. Component of a regulatory loop that controls autophagy and p53/tp53 levels (By similarity). (862 aa)
bap1Ubiquitin carboxyl-terminal hydrolase BAP1; Deubiquitinating enzyme that plays a key role in chromatin by mediating deubiquitination of histone H2A. Catalytic component of the PR-DUB complex, a complex that specifically mediates deubiquitination of histone H2A monoubiquitinated at 'Lys-119' (H2AK119ub1) (By similarity); Belongs to the peptidase C12 family. BAP1 subfamily. (700 aa)
usp42Ubiquitin carboxyl-terminal hydrolase. (703 aa)
OTUD7BOTU deubiquitinase 7B. (869 aa)
josd2Sec23 homolog B, COPII coat complex component. (184 aa)
usp2Ubiquitin carboxyl-terminal hydrolase. (577 aa)
USP54Ubiquitin specific peptidase 54. (1591 aa)
otud4Suppressor of cancer cell invasion. (1051 aa)
chiaUbiquitin carboxyl-terminal hydrolase. (693 aa)
cops5COP9 signalosome complex subunit 5; Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity. In the complex, it probably acts as the catalytic center that mediates the cleavage of nedd8 from cullins. It however has no metalloprotease activity by itself and requires the other subunits of the CSN complex; Belon [...] (356 aa)
ncln-2Nicalin. (1381 aa)
TAF6TATA-box binding protein associated factor 6. (395 aa)
usp13Ubiquitin carboxyl-terminal hydrolase 13; Deubiquitinase that mediates deubiquitination of target proteins and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD). (858 aa)
USP12Ubiquitin specific peptidase 12; Belongs to the peptidase C19 family. (375 aa)
stambpl1Purinergic receptor P2Y, G-protein coupled, 2. (429 aa)
F7AA28_XENTRReverse transcriptase domain-containing protein. (996 aa)
sgf29Pseudouridine synthase like 1. (269 aa)
mysm1Tyrosine kinase 2. (857 aa)
usp15Ubiquitin carboxyl-terminal hydrolase 15; Hydrolase that removes conjugated ubiquitin from target proteins and regulates various pathways such as the TGF-beta receptor signaling and NF-kappa-B pathways. Acts as a key regulator of TGF-beta receptor signaling pathway, but the precise mechanism is still unclear: according to a report, acts by promoting deubiquitination of monoubiquitinated R-SMADs, thereby alleviating inhibition of R-SMADs and promoting activation of TGF-beta target genes. According to another reports, regulates the TGF-beta receptor signaling pathway by mediating deubiqu [...] (982 aa)
ENSXETP00000007878Reverse transcriptase domain-containing protein. (1326 aa)
usp7Synaptophysin; Belongs to the peptidase C19 family. (1131 aa)
LOC101735032USP domain-containing protein; Belongs to the peptidase C19 family. (337 aa)
taf5Myeloid-associated differentiation marker homolog. (777 aa)
dhx58-2Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (292 aa)
sf3b3CPSF_A domain-containing protein. (1217 aa)
LOC101731896DUF862 domain-containing protein. (132 aa)
UCHL5Ubiquitin carboxyl-terminal hydrolase. (329 aa)
uchl1Ubiquitin carboxyl-terminal hydrolase. (286 aa)
USP35Ubiquitin carboxyl-terminal hydrolase. (995 aa)
otud6bDeubiquitinase OTUD6B; Deubiquitinating enzyme that may play a role in the ubiquitin-dependent regulation of different cellular processes. (294 aa)
USP8Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family. (1058 aa)
cops2MGC97656 protein. (443 aa)
usp32Uncharacterized protein; Belongs to the peptidase C19 family. (1643 aa)
psmd14Prokineticin receptor 2. (313 aa)
vcpip1Ubiquitin C. (1194 aa)
senp8LOC100145737 protein. (215 aa)
cops8COP9 signalosome complex subunit 8; Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity (By similarity). (200 aa)
Zc3h12aC3H1-type domain-containing protein. (349 aa)
idi1-2Isopentenyl-diphosphate delta isomerase 1. (290 aa)
usp40Cone-rod homeobox; Belongs to the peptidase C19 family. (1227 aa)
map1lc3a-3Microtubule associated protein 1 light chain 3 alpha. (121 aa)
abraxas1BRCA1-A complex subunit Abraxas 1; Involved in DNA damage response and double-strand break (DSB) repair. Component of the BRCA1-A complex, acting as a central scaffold protein that assembles the various components of the complex and mediates the recruitment of brca1. The BRCA1-A complex specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesion sites, leading to target the brca1-bard1 heterodimer to sites of DNA damage at DSBs. This complex also possesses deubiquitinase activity that specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX [...] (408 aa)
usp3Ubiquitinyl hydrolase 1. (529 aa)
ENSXETP00000050419Ski_Sno domain-containing protein. (403 aa)
cops6COP9 signalosome complex subunit 6; Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes (By similarity). The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of E3 ligase complexes, leading to modify the Ubl ligase activity (By similarity). (350 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
OTUD1OTU deubiquitinase 1. (274 aa)
USP37Ubiquitin carboxyl-terminal hydrolase. (976 aa)
stambpSTAM-binding protein. (416 aa)
usp20Ubiquitin carboxyl-terminal hydrolase 20; Deubiquitinating enzyme involved in beta-2 adrenergic receptor (adrb2) recycling. Acts as a regulator of G-protein coupled receptor (GPCR) signaling by mediating the deubiquitination beta-2 adrenergic receptor (adrb2). Plays a central role in adrb2 recycling and resensitization after prolonged agonist stimulation by constitutively binding adrb2, mediating deubiquitination of adrb2 and inhibiting lysosomal trafficking of adrb2. Mediates deubiquitination of both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains (By similarity); Belongs to the pe [...] (932 aa)
cyldTLR4 interactor with leucine-rich repeats; Belongs to the peptidase C19 family. (975 aa)
usp47Ubiquitin carboxyl-terminal hydrolase 47; Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (polb), stabilizing polb thereby playing a role in base-excision repair (BER). (1354 aa)
usp19Uncharacterized protein. (1465 aa)
USP4Ubiquitin carboxyl-terminal hydrolase. (978 aa)
usp24Proteasome subunit beta 6; Belongs to the peptidase C19 family. (2594 aa)
usp25USP domain-containing protein; Belongs to the peptidase C19 family. (1157 aa)
tlk2Serine/threonine-protein kinase tousled-like 2; Negative regulator of amino acid starvation-induced autophagy. (724 aa)
usp33Ubiquitin carboxyl-terminal hydrolase 33; Deubiquitinating enzyme involved in various processes such as centrosome duplication, cellular migration and beta-2 adrenergic receptor/ADRB2 recycling. Involved in regulation of centrosome duplication by mediating deubiquitination of ccp110 in S and G2/M phase, leading to stabilize ccp110 during the period which centrioles duplicate and elongate. Involved in cell migration via its interaction with intracellular domain of robo1, leading to regulate the Slit signaling. Plays a role in commissural axon guidance cross the ventral midline of the ne [...] (904 aa)
usp43Solute carrier family 29 (equilibrative nucleoside transporter), member 2; Belongs to the peptidase C19 family. (802 aa)
ATXN7L1Ataxin 7 like 1. (902 aa)
usp14Ubiquitin carboxyl-terminal hydrolase. (492 aa)
otub2Minichromosome maintenance complex component 3. (248 aa)
TAF6LTATA-box binding protein associated factor 6 like. (574 aa)
usp34Queuine tRNA-ribosyltransferase catalytic subunit 1; Belongs to the peptidase C19 family. (3543 aa)
ENSXETP00000044680Reverse transcriptase domain-containing protein. (657 aa)
mindy4bMethyltransferase-like 26. (365 aa)
COPS7BCOP9 signalosome subunit 7B. (264 aa)
usp12bUSP domain-containing protein; Belongs to the peptidase C19 family. (369 aa)
atxn3Sorting nexin-30. (356 aa)
uspl1Exportin 1. (1929 aa)
OTUD7AOTU deubiquitinase 7A. (928 aa)
ncoa6-2USP domain-containing protein; Belongs to the peptidase C19 family. (2558 aa)
TRRAPTransformation/transcription domain associated protein; Belongs to the PI3/PI4-kinase family. (3845 aa)
babam1BRISC and BRCA1-A complex member 1; Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'- linked ubiquitin on histones H2A and H2AX. In the BRCA1-A complex, it is required for the complex integrity and its localization at DSBs. Component of the BRISC complex, a multiprotein complex that specifically cl [...] (328 aa)
F7BLJ8_XENTRReverse transcriptase domain-containing protein. (730 aa)
scnn1a-2Ubiquitin carboxyl-terminal hydrolase. (806 aa)
uimc1BRCA1-A complex subunit RAP80; Ubiquitin-binding protein that specifically recognizes and binds 'Lys-63'-linked ubiquitin. Plays a central role in the BRCA1-A complex by specifically binding 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the brca1-bard1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX. Also weakly binds monoubiquitin but with much less affinity than 'Lys-63'-linked ubiquiti [...] (874 aa)
USP31Ubiquitin specific peptidase 31; Belongs to the peptidase C19 family. (1248 aa)
camlg-2Calcium modulating ligand. (1348 aa)
abraxas2BRISC complex subunit Abraxas 2; Component of the BRISC complex, a multiprotein complex that specifically cleaves 'Lys-63'-linked polyubiquitin, leaving the last ubiquitin chain attached to its substrates. May act as a central scaffold protein that assembles the various components of the BRISC complex and retains them in the cytoplasm (By similarity). Plays a role in regulating the onset of apoptosis via its role in modulating 'Lys- 63'-linked ubiquitination of target proteins (By similarity). Required for normal mitotic spindle assembly and microtubule attachment to kinetochores via i [...] (390 aa)
zranb1Ubiquitin thioesterase zranb1; Specifically hydrolyzes 'Lys-29'-linked and 'Lys-33'-linked diubiquitin. Also cleaves 'Lys-63'-linked chains, but with 40-fold less efficiency compared to 'Lys-29'-linked ones. Positive regulator of the Wnt signaling pathway that deubiquitinates APC protein, a negative regulator of Wnt-mediated transcription. May play a role in the regulation of cell morphology and cytoskeletal organization. Required in the stress fiber dynamics and cell migration (By similarity). (729 aa)
taf5lRelaxin family peptide receptor 3. (588 aa)
ENSXETP00000039203Reverse transcriptase domain-containing protein. (885 aa)
SPATA2Spermatogenesis associated 2. (519 aa)
desi2lDUF862 domain-containing protein. (192 aa)
senp5ULP_PROTEASE domain-containing protein. (725 aa)
senp7Tetraspanin-9. (863 aa)
usp30Ubiquitin carboxyl-terminal hydrolase 30; Deubiquitinating enzyme that acts as a key inhibitor of mitophagy by counteracting the action of parkin (PRKN). (519 aa)
USP38Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family. (1034 aa)
usp44Ubiquitin carboxyl-terminal hydrolase 44; Deubiquitinase that plays a key role in the spindle checkpoint by preventing premature anaphase onset. Acts by specifically mediating deubiquitination of cdc20, a negative regulator of the anaphase promoting complex/cyclosome (APC/C) (By similarity). (704 aa)
usp39Membrane associated guanylate kinase, WW and PDZ domain containing 1. (577 aa)
YOD1YOD1 deubiquitinase. (329 aa)
OTUB1Ubiquitin thioesterase. (268 aa)
LOC101733270Uncharacterized protein. (340 aa)
pgpep1-2Pyroglutamyl-peptidase I. (108 aa)
usp16Ubiquitin carboxyl-terminal hydrolase 16; Specifically deubiquitinates 'Lys-120' of histone H2A (H2AK119Ub), a specific tag for epigenetic transcriptional repression, thereby acting as a coactivator. Deubiquitination of histone H2A is a prerequisite for subsequent phosphorylation at 'Ser-11' of histone H3 (H3S10ph), and is required for chromosome segregation when cells enter into mitosis. Regulates Hox gene expression via histone H2A deubiquitination. Prefers nucleosomal substrates. Does not deubiquitinate histone H2B. (864 aa)
rpl7l1Ribosomal protein L7 like 1; Belongs to the peptidase C19 family. (332 aa)
desi1DUF862 domain-containing protein. (205 aa)
usp1Ubiquitin carboxyl-terminal hydrolase. (774 aa)
DESI2Desumoylating isopeptidase 2. (194 aa)
usp22Ubiquitin carboxyl-terminal hydrolase. (572 aa)
brcc3Lys-63-specific deubiquitinase BRCC36; Metalloprotease that specifically cleaves 'Lys-63'-linked polyubiquitin chains. Does not have activity toward 'Lys-48'-linked polyubiquitin chains. Component of the BRCA1-A complex, a complex that specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the brca1-bard1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). In the BRCA1-A complex, it specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX, antagonizing the rnf8-dependent ubiquitination at double- [...] (277 aa)
mindy2Mortality factor 4 like 1. (512 aa)
LOC100489307Dynein, axonemal, heavy chain 2; Belongs to the peptidase C19 family. (757 aa)
ENSXETP00000028155Reverse transcriptase domain-containing protein. (1255 aa)
usp53TBC1 domain family member 5. (1018 aa)
TAF2TATA-box binding protein associated factor 2. (1191 aa)
ENSXETP00000027220USP domain-containing protein. (107 aa)
eif3fEukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (309 aa)
ENSXETP00000025603Ubiquitin carboxyl-terminal hydrolase. (384 aa)
atxn7SCA7 domain-containing protein. (905 aa)
gps1PCI domain-containing protein. (560 aa)
MINDY1MINDY lysine 48 deubiquitinase 1. (506 aa)
taf12Microtubule associated serine/threonine kinase 1. (218 aa)
txlna-2Taxilin alpha. (843 aa)
eny2Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (96 aa)
supt7lBTP domain-containing protein. (412 aa)
usp48Protein tyrosine phosphatase type IVA, member 2; Belongs to the peptidase C19 family. (1039 aa)
usp28Rho GTPase activating protein 28; Belongs to the peptidase C19 family. (1104 aa)
usp21Kallikrein B1; Belongs to the peptidase C19 family. (511 aa)
josd1General transcription factor 2B. (201 aa)
mindy3Ubiquitin carboxyl-terminal hydrolase MINDY-3; Hydrolase that can remove 'Lys-48'-linked conjugated ubiquitin from proteins. (445 aa)
ENSXETP00000021535Reverse transcriptase domain-containing protein. (1245 aa)
OTULINOTU deubiquitinase with linear linkage specificity. (541 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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