STRINGSTRING
LOC100496691 LOC100496691 mapre1 mapre1 LOC101733288 LOC101733288 ccdc187 ccdc187 CLIP4 CLIP4 clip3 clip3 shmt1 shmt1 knstrn knstrn Rskr Rskr spag5 spag5 kif2c kif2c nckap5l nckap5l clip1 clip1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100496691Interferon regulatory factor 8. (197 aa)
mapre1Microtubule-associated protein RP/EB family member 1; Plus-end tracking protein (+TIP) that binds to the plus-end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes cytoplasmic microtubule nucleation and elongation. May be involved in spindle function by stabilizing microtubules and anchoring them at centrosomes. Belongs to the MAPRE family. (302 aa)
LOC101733288Membrane associated ring-CH-type finger 6. (124 aa)
ccdc187Latent transforming growth factor beta binding protein 1. (1692 aa)
CLIP4CAP-Gly domain containing linker protein family member 4. (547 aa)
clip3ANTXR cell adhesion molecule 1. (534 aa)
shmt1Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (485 aa)
knstrnUncharacterized protein. (242 aa)
RskrProtein kinase domain-containing protein. (180 aa)
spag5Interferon induced, with helicase C domain 1. (1498 aa)
kif2cKinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (715 aa)
nckap5lProbable cysteine--tRNA ligase, mitochondrial. (1263 aa)
clip1Uncharacterized protein. (2361 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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