STRINGSTRING
tbl1x tbl1x myc myc rlbp1 rlbp1 h3c13 h3c13 dazap1 dazap1 ENSXETP00000002330 ENSXETP00000002330 h3c13-2 h3c13-2 h3c13-4 h3c13-4 h3c13-5 h3c13-5 vsx1 vsx1 h3-3b h3-3b gja7-2 gja7-2 msi1 msi1 h3c13-6 h3c13-6 h3c13-7 h3c13-7 h3c13-9 h3c13-9 h3c13-10 h3c13-10 h3c13-11 h3c13-11 lrch2-2 lrch2-2 h3c13-13 h3c13-13 h3c13-15 h3c13-15 eef1a1 eef1a1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tbl1xUncharacterized protein. (565 aa)
mycTranscriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. (418 aa)
rlbp1CRAL-TRIO domain-containing protein. (326 aa)
h3c13Histone H3.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (136 aa)
dazap1Uncharacterized protein. (407 aa)
ENSXETP00000002330Histone H3; Belongs to the histone H3 family. (136 aa)
h3c13-2Histone H3. (136 aa)
h3c13-4Histone H3. (136 aa)
h3c13-5Histone H3. (136 aa)
vsx1Semaphorin 3F like. (344 aa)
h3-3bHistone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
gja7-2Histone H3; Belongs to the histone H3 family. (135 aa)
msi1Uncharacterized protein. (347 aa)
h3c13-6Histone H3. (136 aa)
h3c13-7Histone H3. (136 aa)
h3c13-9Histone H3. (136 aa)
h3c13-10Histone H3. (136 aa)
h3c13-11Histone H3. (136 aa)
lrch2-2Histone H3; Belongs to the histone H3 family. (124 aa)
h3c13-13Histone H3. (136 aa)
h3c13-15Histone H3. (136 aa)
eef1a1Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (462 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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