STRINGSTRING
pxdn pxdn lrch2-2 lrch2-2 prl.1 prl.1 h3c13-13 h3c13-13 h3c13-15 h3c13-15 cyth3 cyth3 ENSXETP00000002330 ENSXETP00000002330 h3c13-2 h3c13-2 h3c13-4 h3c13-4 h3c13-5 h3c13-5 prl.2 prl.2 acta2 acta2 ENSXETP00000011359 ENSXETP00000011359 tnni3 tnni3 h3-3b h3-3b gja7-2 gja7-2 h3c13-6 h3c13-6 h3c13-7 h3c13-7 selenof-2 selenof-2 h3c13-9 h3c13-9 h3c13-10 h3c13-10 h3c13-11 h3c13-11 sod3-2 sod3-2 nr3c1 nr3c1 h3c13 h3c13
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pxdnPeroxidasin. (1546 aa)
lrch2-2Histone H3; Belongs to the histone H3 family. (124 aa)
prl.1Alanine aminotransferase 2. (230 aa)
h3c13-13Histone H3. (136 aa)
h3c13-15Histone H3. (136 aa)
cyth3Olfactory receptor family 52 subfamily D member 1. (411 aa)
ENSXETP00000002330Histone H3; Belongs to the histone H3 family. (136 aa)
h3c13-2Histone H3. (136 aa)
h3c13-4Histone H3. (136 aa)
h3c13-5Histone H3. (136 aa)
prl.2NLR family, pyrin domain-containing 3. (219 aa)
acta2Uncharacterized protein. (404 aa)
ENSXETP00000011359Uncharacterized protein. (183 aa)
tnni3Transmembrane protein 256. (245 aa)
h3-3bHistone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
gja7-2Histone H3; Belongs to the histone H3 family. (135 aa)
h3c13-6Histone H3. (136 aa)
h3c13-7Histone H3. (136 aa)
selenof-2Selenoprotein F. (1185 aa)
h3c13-9Histone H3. (136 aa)
h3c13-10Histone H3. (136 aa)
h3c13-11Histone H3. (136 aa)
sod3-2Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (304 aa)
nr3c1Bestrophin 3. (778 aa)
h3c13Histone H3.2; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (136 aa)
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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