(53 nodes) Rab subfamily of small GTPases network (Xenopus tropicalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rab5a	RAB5A, member RAS oncogene family. (216 aa)
	rab7a	RAB7A, member RAS oncogene family. (207 aa)
	rab11a	RAB11A, member RAS oncogene family. (216 aa)
	rab8a	Chloride channel, voltage-sensitive 7. (220 aa)
	rab21	RAB21, member RAS oncogene family. (221 aa)
	rab14	Uncharacterized protein. (214 aa)
	rab1a	Uncharacterized protein. (205 aa)
	RAB12	RAB12, member RAS oncogene family. (248 aa)
	LOC100496061	Uncharacterized protein. (210 aa)
	rab24	RAB24, member RAS oncogene family. (203 aa)
	rab9b	RAB9B, member RAS oncogene family. (201 aa)
	rab26	Uncharacterized protein. (249 aa)
	MGC75872	Uncharacterized protein. (199 aa)
	rab6b	Uncharacterized protein. (216 aa)
	rab35	RAB35, member RAS oncogene family. (201 aa)
	rab19	Ras-related protein Rab-19. (213 aa)
	rasef	Glutamate rich 3. (653 aa)
	rab3b	Rab3b protein. (217 aa)
	rab38	Glutathione peroxidase 1. (212 aa)
	rab40b	RAB40B, member RAS oncogene family. (278 aa)
	rab23	RAB23, member RAS oncogene family. (238 aa)
	rab39a	Olfactomedin like 2B. (206 aa)
	rab30	RAB30, member RAS oncogene family. (203 aa)
	rab4b	RAB4B, member RAS oncogene family. (213 aa)
	rab39b	Nuclear receptor subfamily 6 group A member 1. (213 aa)
	rab7b	Uncharacterized protein. (201 aa)
	rab29	LOC100135159 protein. (204 aa)
	rab3a	RAB3A, member RAS oncogene family. (220 aa)
	rab31	Non-SMC condensin I complex subunit D2. (206 aa)
	rab35l	Uncharacterized protein. (201 aa)
	rab33a	RAB33A, member RAS oncogene family. (215 aa)
	rab2b	Rab2b, member Ras oncogene family. (215 aa)
	rab27b	LEM domain containing 3. (308 aa)
	rab41	LOC100124772 protein. (210 aa)
	rab33b	RAB33B, member RAS oncogene family. (226 aa)
	rab11b.2	Human immunodeficiency virus type I enhancer binding protein 3. (218 aa)
	rab34	RAB34, member RAS oncogene family. (259 aa)
	rab11b.1	Leucine rich repeat containing 8 VRAC subunit A. (221 aa)
	rab27a	RAB27A, member RAS oncogene family. (221 aa)
	rab9a	Vasodilator stimulated phosphoprotein. (201 aa)
	rab5d	RAB5B, member RAS oncogene family. (213 aa)
	rab40c	Targeting protein for Xklp2. (286 aa)
	RAB2A	RAB2A, member RAS oncogene family. (217 aa)
	rab37	Forkhead box G1. (218 aa)
	rab25	RAB25, member RAS oncogene family. (216 aa)
	rab3d	RAB3D, member RAS oncogene family. (216 aa)
	rab18	Thrombospondin type 1 domain containing 1. (219 aa)
	rasef-2	Ras and EF-hand domain-containing protein; Binds predominantly GDP, and also GTP. (722 aa)
	rab32	Uncharacterized protein. (258 aa)
	rab15	RAB15, member RAS onocogene family. (212 aa)
	rab8b	PBX/knotted 1 homeobox 2. (207 aa)
	RAB3C	RAB3C, member RAS oncogene family. (227 aa)
	rab5b	RAB5B, member RAS oncogene family. (215 aa)

Your Current Organism:

Xenopus tropicalis

NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MGC75872	rab7a	ENSXETP00000014158	ENSXETP00000001262	Uncharacterized protein.	RAB7A, member RAS oncogene family.	0.922
MGC75872	rab7b	ENSXETP00000014158	ENSXETP00000028197	Uncharacterized protein.	Uncharacterized protein.	0.917
rab11a	rab11b.2	ENSXETP00000005237	ENSXETP00000037510	RAB11A, member RAS oncogene family.	Human immunodeficiency virus type I enhancer binding protein 3.	0.900
rab11a	rab1a	ENSXETP00000005237	ENSXETP00000008368	RAB11A, member RAS oncogene family.	Uncharacterized protein.	0.584
rab11b.1	rab1a	ENSXETP00000037573	ENSXETP00000008368	Leucine rich repeat containing 8 VRAC subunit A.	Uncharacterized protein.	0.586
rab11b.2	rab11a	ENSXETP00000037510	ENSXETP00000005237	Human immunodeficiency virus type I enhancer binding protein 3.	RAB11A, member RAS oncogene family.	0.900
rab11b.2	rab1a	ENSXETP00000037510	ENSXETP00000008368	Human immunodeficiency virus type I enhancer binding protein 3.	Uncharacterized protein.	0.584
rab15	rab1a	ENSXETP00000049420	ENSXETP00000008368	RAB15, member RAS onocogene family.	Uncharacterized protein.	0.503
rab18	rab19	ENSXETP00000044942	ENSXETP00000016374	Thrombospondin type 1 domain containing 1.	Ras-related protein Rab-19.	0.437
rab18	rab30	ENSXETP00000044942	ENSXETP00000024125	Thrombospondin type 1 domain containing 1.	RAB30, member RAS oncogene family.	0.411
rab19	rab18	ENSXETP00000016374	ENSXETP00000044942	Ras-related protein Rab-19.	Thrombospondin type 1 domain containing 1.	0.437
rab1a	rab11a	ENSXETP00000008368	ENSXETP00000005237	Uncharacterized protein.	RAB11A, member RAS oncogene family.	0.584
rab1a	rab11b.1	ENSXETP00000008368	ENSXETP00000037573	Uncharacterized protein.	Leucine rich repeat containing 8 VRAC subunit A.	0.586
rab1a	rab11b.2	ENSXETP00000008368	ENSXETP00000037510	Uncharacterized protein.	Human immunodeficiency virus type I enhancer binding protein 3.	0.584
rab1a	rab15	ENSXETP00000008368	ENSXETP00000049420	Uncharacterized protein.	RAB15, member RAS onocogene family.	0.503
rab1a	rab41	ENSXETP00000008368	ENSXETP00000036024	Uncharacterized protein.	LOC100124772 protein.	0.500
rab1a	rab6b	ENSXETP00000008368	ENSXETP00000014750	Uncharacterized protein.	Uncharacterized protein.	0.501
rab1a	rab8a	ENSXETP00000008368	ENSXETP00000006239	Uncharacterized protein.	Chloride channel, voltage-sensitive 7.	0.495
rab1a	rab8b	ENSXETP00000008368	ENSXETP00000050737	Uncharacterized protein.	PBX/knotted 1 homeobox 2.	0.495
rab30	rab18	ENSXETP00000024125	ENSXETP00000044942	RAB30, member RAS oncogene family.	Thrombospondin type 1 domain containing 1.	0.411

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About