(44 nodes) Mixed, incl. ABC transporter-like, ATP-binding domain, and ABC-type transporter activity network (Spiroplasma mirum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHI57812.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (538 aa)
	AHI57992.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (167 aa)
	AHI57993.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (67 aa)
	AHI57994.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (57 aa)
	AHI57996.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (32 aa)
	AHI57997.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (68 aa)
	AHI57998.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (111 aa)
	AHI58070.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (120 aa)
	AHI58071.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (601 aa)
	AHI58072.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (311 aa)
	AHI58073.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (302 aa)
	AHI58074.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (67 aa)
	AHI58075.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (101 aa)
	AHI58076.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (995 aa)
	AHI58077.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (261 aa)
	AHI58087.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (117 aa)
	AHI58088.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (362 aa)
	AHI58089.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (198 aa)
	AHI58090.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (362 aa)
	AHI58091.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (266 aa)
	AHI58092.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (245 aa)
	AHI58093.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (256 aa)
	AHI58182.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (138 aa)
	AHI58183.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (54 aa)
	AHI58184.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (96 aa)
	AHI58185.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (144 aa)
	AHI58198.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (102 aa)
	AHI58199.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (120 aa)
	AHI58201.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (220 aa)
	AHI58202.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (134 aa)
	AHI58203.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (91 aa)
	AHI58204.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (70 aa)
	AHI58205.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (35 aa)
	AHI58206.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (90 aa)
	AHI58207.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (115 aa)
	AHI58208.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (85 aa)
	AHI58257.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (89 aa)
	AHI58258.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (138 aa)
	AHI58259.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (56 aa)
	AHI58260.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (31 aa)
	AHI58261.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (194 aa)
	AHI58262.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (59 aa)
	AHI58263.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (136 aa)
	AHI58264.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (285 aa)

Your Current Organism:

Spiroplasma mirum

NCBI taxonomy Id: 838561
Other names: S. mirum ATCC 29335, Spiroplasma mirum ATCC 29335, Spiroplasma mirum SMCA, Spiroplasma mirum str. ATCC 29335, Spiroplasma mirum strain ATCC 29335

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHI57812.1	AHI57992.1	P344_02325	P344_03240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57812.1	AHI58071.1	P344_02325	P344_03650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57812.1	AHI58204.1	P344_02325	P344_04395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57812.1	AHI58206.1	P344_02325	P344_04405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57812.1	AHI58262.1	P344_02325	P344_04700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57812.1	AHI58263.1	P344_02325	P344_04705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57992.1	AHI57812.1	P344_03240	P344_02325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57992.1	AHI57993.1	P344_03240	P344_03245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AHI57992.1	AHI57994.1	P344_03240	P344_03250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.519
AHI57992.1	AHI57997.1	P344_03240	P344_03270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57992.1	AHI58092.1	P344_03240	P344_03760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57992.1	AHI58182.1	P344_03240	P344_04285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57992.1	AHI58183.1	P344_03240	P344_04290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57992.1	AHI58202.1	P344_03240	P344_04385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57992.1	AHI58257.1	P344_03240	P344_04675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57992.1	AHI58258.1	P344_03240	P344_04680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AHI57993.1	AHI57992.1	P344_03245	P344_03240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AHI57993.1	AHI57994.1	P344_03245	P344_03250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.519
AHI57994.1	AHI57992.1	P344_03250	P344_03240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.519
AHI57994.1	AHI57993.1	P344_03250	P344_03245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.519

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