STRINGSTRING
AHI57579.1 AHI57579.1 AHI57636.1 AHI57636.1 tsaD tsaD miaA miaA AHI58372.1 AHI58372.1 AHI58373.1 AHI58373.1 AHI58374.1 AHI58374.1 AHI58375.1 AHI58375.1 AHI58524.1 AHI58524.1 AHI58533.1 AHI58533.1 AHI58563.1 AHI58563.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AHI57579.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the thioredoxin family. (102 aa)
AHI57636.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (204 aa)
tsaDHypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (316 aa)
miaAHypothetical protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (311 aa)
AHI58372.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (142 aa)
AHI58373.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (193 aa)
AHI58374.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (154 aa)
AHI58375.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (328 aa)
AHI58524.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (315 aa)
AHI58533.1Nitrogen-fixing protein NifU; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (75 aa)
AHI58563.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the Fur family. (158 aa)
Your Current Organism:
Spiroplasma mirum
NCBI taxonomy Id: 838561
Other names: S. mirum ATCC 29335, Spiroplasma mirum ATCC 29335, Spiroplasma mirum SMCA, Spiroplasma mirum str. ATCC 29335, Spiroplasma mirum strain ATCC 29335
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