48 items (Gemella sanguinis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CJ218_01395	Unannotated protein. (296 aa)
	CJ218_03100	Unannotated protein. (434 aa)
	CJ218_04785	Unannotated protein. (227 aa)
	GCA_001052115_00176	Unannotated protein. (334 aa)
	CJ218_04800	Unannotated protein. (300 aa)
	CJ218_03780	Unannotated protein. (152 aa)
	XerS	Unannotated protein; Belongs to the 'phage' integrase family. (348 aa)
	CJ218_06275	Unannotated protein. (224 aa)
	CJ218_07615	Unannotated protein; Provides the (R)-glutamate required for cell wall biosynthesis. (214 aa)
	CJ218_02920	Unannotated protein. (181 aa)
	CJ218_02735	Unannotated protein. (316 aa)
	CJ218_02730	Unannotated protein. (251 aa)
	CJ218_02615	Unannotated protein. (241 aa)
	CJ218_00060	Unannotated protein. (416 aa)
	CJ218_06615	Unannotated protein. (144 aa)
	CJ218_06620	Unannotated protein. (147 aa)
	CJ218_06630	Unannotated protein. (173 aa)
	CJ218_06655	Unannotated protein. (105 aa)
	CJ218_06685	Unannotated protein. (457 aa)
	CJ218_06690	Unannotated protein. (274 aa)
	CJ218_06695	Unannotated protein. (394 aa)
	CJ218_00590	Unannotated protein. (728 aa)
	GCA_001052115_00724	Unannotated protein. (526 aa)
	CJ218_08340	Unannotated protein. (205 aa)
	CJ218_00480	Unannotated protein. (303 aa)
	CJ218_00485	Unannotated protein. (191 aa)
	CJ218_00490	Unannotated protein. (226 aa)
	CJ218_00495	Unannotated protein. (380 aa)
	CJ218_06015	Unannotated protein. (234 aa)
	CJ218_06360	Unannotated protein. (1672 aa)
	GCA_001052115_01107	Unannotated protein. (46 aa)
	CJ218_06370	Unannotated protein. (186 aa)
	CJ218_06375	Unannotated protein. (239 aa)
	GCA_001052115_01111	Unannotated protein. (32 aa)
	CJ218_05525	Unannotated protein. (272 aa)
	CJ218_08455	Unannotated protein. (333 aa)
	CJ218_08450	Unannotated protein. (674 aa)
	CJ218_04420	Unannotated protein. (824 aa)
	CJ218_08010	Unannotated protein. (95 aa)
	CJ218_08005	Unannotated protein. (399 aa)
	CJ218_07450	Unannotated protein. (254 aa)
	CJ218_06415	Unannotated protein. (343 aa)
	CJ218_02080	Unannotated protein. (426 aa)
	CJ218_02165	Unannotated protein. (228 aa)
	CJ218_02170	Unannotated protein. (150 aa)
	CJ218_02210	Unannotated protein. (622 aa)
	CJ218_02490	Unannotated protein. (190 aa)
	CJ218_00235	Unannotated protein. (119 aa)

Your Current Organism:

Gemella sanguinis

NCBI taxonomy Id: 84135
Other names: ATCC 700632, CCUG 37820, CIP 105929, G. sanguinis, Gemella sp. 2045-94, LMG 18986, LMG:18986, strain 2045-94

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CJ218_00060	CJ218_00235	GCA_001052115_00553	GCA_001052115_01793	Unannotated protein.	Unannotated protein.	0.483
CJ218_00060	CJ218_00495	GCA_001052115_00553	GCA_001052115_01036	Unannotated protein.	Unannotated protein.	0.478
CJ218_00060	CJ218_00590	GCA_001052115_00553	GCA_001052115_00652	Unannotated protein.	Unannotated protein.	0.526
CJ218_00060	CJ218_02210	GCA_001052115_00553	GCA_001052115_01485	Unannotated protein.	Unannotated protein.	0.571
CJ218_00060	CJ218_02730	GCA_001052115_00553	GCA_001052115_00494	Unannotated protein.	Unannotated protein.	0.404
CJ218_00060	CJ218_02735	GCA_001052115_00553	GCA_001052115_00493	Unannotated protein.	Unannotated protein.	0.488
CJ218_00060	CJ218_03100	GCA_001052115_00553	GCA_001052115_00135	Unannotated protein.	Unannotated protein.	0.412
CJ218_00060	CJ218_04420	GCA_001052115_00553	GCA_001052115_01288	Unannotated protein.	Unannotated protein.	0.623
CJ218_00060	CJ218_04785	GCA_001052115_00553	GCA_001052115_00174	Unannotated protein.	Unannotated protein.	0.501
CJ218_00060	CJ218_04800	GCA_001052115_00553	GCA_001052115_00177	Unannotated protein.	Unannotated protein.	0.454
CJ218_00060	CJ218_06015	GCA_001052115_00553	GCA_001052115_01073	Unannotated protein.	Unannotated protein.	0.580
CJ218_00060	CJ218_06275	GCA_001052115_00553	GCA_001052115_00407	Unannotated protein.	Unannotated protein.	0.689
CJ218_00060	CJ218_06370	GCA_001052115_00553	GCA_001052115_01109	Unannotated protein.	Unannotated protein.	0.471
CJ218_00060	CJ218_06630	GCA_001052115_00553	GCA_001052115_00600	Unannotated protein.	Unannotated protein.	0.679
CJ218_00060	CJ218_08005	GCA_001052115_00553	GCA_001052115_01318	Unannotated protein.	Unannotated protein.	0.493
CJ218_00060	CJ218_08450	GCA_001052115_00553	GCA_001052115_01264	Unannotated protein.	Unannotated protein.	0.681
CJ218_00235	CJ218_00060	GCA_001052115_01793	GCA_001052115_00553	Unannotated protein.	Unannotated protein.	0.483
CJ218_00235	CJ218_00590	GCA_001052115_01793	GCA_001052115_00652	Unannotated protein.	Unannotated protein.	0.482
CJ218_00235	CJ218_02080	GCA_001052115_01793	GCA_001052115_01457	Unannotated protein.	Unannotated protein.	0.520
CJ218_00235	CJ218_02210	GCA_001052115_01793	GCA_001052115_01485	Unannotated protein.	Unannotated protein.	0.537