(39 nodes) SCF ubiquitin ligase complex network (Labeo rohita)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ROHU_006309	Cyclin-F; Belongs to the cyclin family. (744 aa)
	ROHU_035341	F-box LRR-repeat 5. (1121 aa)
	ROHU_031830	F-box only 41-like protein. (472 aa)
	ROHU_032775	Transmembrane protein 183A. (360 aa)
	ROHU_002886	E3 ubiquitin-ligase RBX1. (108 aa)
	ROHU_014408	F-box LRR-repeat 21. (436 aa)
	ROHU_003982	F-box LRR-repeat 6. (188 aa)
	ROHU_003983	F-box LRR-repeat 6-like protein. (255 aa)
	ROHU_002346	Cyclin-F. (285 aa)
	ROHU_000506	F-box LRR-repeat 19-like isoform X1. (139 aa)
	ROHU_011452	F-box LRR-repeat 15. (298 aa)
	ROHU_031157	F-box only 25-like isoform X1. (318 aa)
	ROHU_027127	F-box LRR-repeat 19-like isoform X1. (193 aa)
	ROHU_028136	F-box and leucine-rich 22. (227 aa)
	ROHU_008117	F-box only 42. (308 aa)
	ROHU_007312	F-box LRR-repeat 7. (442 aa)
	ROHU_037021	F-box LRR-repeat 19-like isoform X1. (711 aa)
	ROHU_008767	F-box DNA helicase 1-like protein. (1407 aa)
	ROHU_028106	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (965 aa)
	ROHU_026563	Nuclear-interacting partner of ALK-like protein. (469 aa)
	ROHU_024913	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (78 aa)
	ROHU_008256	F-box LRR-repeat 14. (411 aa)
	ROHU_008118	F-box only 42. (338 aa)
	ROHU_024588	F-box LRR-repeat 3. (493 aa)
	ROHU_025666	F-box WD repeat-containing 11-like protein. (493 aa)
	ROHU_015985	Chondroadherin. (515 aa)
	ROHU_017378	F-box LRR-repeat 3. (430 aa)
	ROHU_019246	F-box LRR-repeat 17. (169 aa)
	ROHU_019247	F-box LRR-repeat 17. (133 aa)
	ROHU_018400	F-box LRR-repeat 3-like protein. (445 aa)
	ROHU_021381	F-box LRR-repeat 14. (400 aa)
	ROHU_005842	F-box WD repeat-containing 11-like isoform X2. (380 aa)
	ROHU_021622	Cullin-1; Belongs to the cullin family. (327 aa)
	ROHU_020469	S-phase kinase-associated 2-like isoform X2. (1190 aa)
	ROHU_020122	F-box only 33. (484 aa)
	ROHU_022729	F-box LRR-repeat 7-like protein. (492 aa)
	ROHU_006637	F-box only 9 isoform X1. (317 aa)
	ROHU_022788	F-box LRR-repeat 14. (411 aa)
	ROHU_022485	F-box LRR-repeat 2-like protein. (884 aa)

Your Current Organism:

Labeo rohita

NCBI taxonomy Id: 84645
Other names: Cyprinus rohita, Jayanti rohu, L. rohita, rohu

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ROHU_000506	ROHU_002886	A0A498P4F5	A0A498NYN6	F-box LRR-repeat 19-like isoform X1.	E3 ubiquitin-ligase RBX1.	0.849
ROHU_000506	ROHU_005842	A0A498P4F5	A0A498N9E2	F-box LRR-repeat 19-like isoform X1.	F-box WD repeat-containing 11-like isoform X2.	0.504
ROHU_000506	ROHU_006637	A0A498P4F5	A0A498N3I3	F-box LRR-repeat 19-like isoform X1.	F-box only 9 isoform X1.	0.761
ROHU_000506	ROHU_015985	A0A498P4F5	A0A498NM20	F-box LRR-repeat 19-like isoform X1.	Chondroadherin.	0.849
ROHU_000506	ROHU_020469	A0A498P4F5	A0A498N8U1	F-box LRR-repeat 19-like isoform X1.	S-phase kinase-associated 2-like isoform X2.	0.635
ROHU_000506	ROHU_021622	A0A498P4F5	A0A498N999	F-box LRR-repeat 19-like isoform X1.	Cullin-1; Belongs to the cullin family.	0.874
ROHU_000506	ROHU_025666	A0A498P4F5	A0A498MJF9	F-box LRR-repeat 19-like isoform X1.	F-box WD repeat-containing 11-like protein.	0.504
ROHU_000506	ROHU_027127	A0A498P4F5	A0A498MAX8	F-box LRR-repeat 19-like isoform X1.	F-box LRR-repeat 19-like isoform X1.	0.837
ROHU_000506	ROHU_031157	A0A498P4F5	A0A498LTF6	F-box LRR-repeat 19-like isoform X1.	F-box only 25-like isoform X1.	0.466
ROHU_002346	ROHU_002886	A0A498NZH9	A0A498NYN6	Cyclin-F.	E3 ubiquitin-ligase RBX1.	0.712
ROHU_002346	ROHU_006637	A0A498NZH9	A0A498N3I3	Cyclin-F.	F-box only 9 isoform X1.	0.402
ROHU_002346	ROHU_015985	A0A498NZH9	A0A498NM20	Cyclin-F.	Chondroadherin.	0.712
ROHU_002346	ROHU_020469	A0A498NZH9	A0A498N8U1	Cyclin-F.	S-phase kinase-associated 2-like isoform X2.	0.848
ROHU_002346	ROHU_021622	A0A498NZH9	A0A498N999	Cyclin-F.	Cullin-1; Belongs to the cullin family.	0.770
ROHU_002346	ROHU_024913	A0A498NZH9	A0A498MH35	Cyclin-F.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.852
ROHU_002346	ROHU_028106	A0A498NZH9	A0A498MEK5	Cyclin-F.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.852
ROHU_002886	ROHU_000506	A0A498NYN6	A0A498P4F5	E3 ubiquitin-ligase RBX1.	F-box LRR-repeat 19-like isoform X1.	0.849
ROHU_002886	ROHU_002346	A0A498NYN6	A0A498NZH9	E3 ubiquitin-ligase RBX1.	Cyclin-F.	0.712
ROHU_002886	ROHU_003982	A0A498NYN6	A0A498NSB7	E3 ubiquitin-ligase RBX1.	F-box LRR-repeat 6.	0.792
ROHU_002886	ROHU_003983	A0A498NYN6	A0A498NR37	E3 ubiquitin-ligase RBX1.	F-box LRR-repeat 6-like protein.	0.792