16 items (Chelonia mydas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UY3_05480	Ribosomal L1 domain-containing protein 1. (367 aa)
	UY3_04733	Putative ATP-dependent RNA helicase DHX36. (1440 aa)
	GNL3	Guanine nucleotide-binding protein-like 3. (558 aa)
	UY3_03834	La-related protein 6. (426 aa)
	FMR1	Fragile X mental retardation protein 1 like protein. (794 aa)
	SHMT1	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (492 aa)
	UY3_05762	La-related protein 1. (700 aa)
	UY3_09319	La-related protein 6. (386 aa)
	IGF2BP2	Insulin-like growth factor 2 mRNA-binding protein 2. (522 aa)
	UY3_09060	Insulin-like growth factor 2 mRNA-binding protein 1. (81 aa)
	UY3_05761	La-related protein 1. (162 aa)
	CCT5	T-complex protein 1 subunit epsilon. (503 aa)
	UY3_05383	28S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (153 aa)
	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1. (541 aa)
	UY3_11358	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3. (85 aa)

Your Current Organism:

Chelonia mydas

NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNL3	UY3_05480	M7BRB5	M7BNR9	Guanine nucleotide-binding protein-like 3.	Ribosomal L1 domain-containing protein 1.	0.939
IGF2BP1	IGF2BP3	M7B720	M7AWK2	Insulin-like growth factor 2 mRNA-binding protein 1.	Insulin-like growth factor 2 mRNA-binding protein 3.	0.900
IGF2BP2	IGF2BP3	M7BZK9	M7AWK2	Insulin-like growth factor 2 mRNA-binding protein 2.	Insulin-like growth factor 2 mRNA-binding protein 3.	0.899
IGF2BP3	IGF2BP1	M7AWK2	M7B720	Insulin-like growth factor 2 mRNA-binding protein 3.	Insulin-like growth factor 2 mRNA-binding protein 1.	0.900
IGF2BP3	IGF2BP2	M7AWK2	M7BZK9	Insulin-like growth factor 2 mRNA-binding protein 3.	Insulin-like growth factor 2 mRNA-binding protein 2.	0.899
UY3_05383	UY3_05480	M7BHV7	M7BNR9	28S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	Ribosomal L1 domain-containing protein 1.	0.555
UY3_05480	GNL3	M7BNR9	M7BRB5	Ribosomal L1 domain-containing protein 1.	Guanine nucleotide-binding protein-like 3.	0.939
UY3_05480	UY3_05383	M7BNR9	M7BHV7	Ribosomal L1 domain-containing protein 1.	28S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.555
UY3_05480	UY3_11358	M7BNR9	M7B374	Ribosomal L1 domain-containing protein 1.	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.	0.637
UY3_05761	UY3_05762	M7C8Y4	M7BYA5	La-related protein 1.	La-related protein 1.	0.917
UY3_05762	UY3_05761	M7BYA5	M7C8Y4	La-related protein 1.	La-related protein 1.	0.917
UY3_11358	UY3_05480	M7B374	M7BNR9	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.	Ribosomal L1 domain-containing protein 1.	0.637