24 items (Chelonia mydas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UY3_18978	Amine oxidase. (513 aa)
	GFPT2	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2. (681 aa)
	UY3_17314	L-asparaginase. (328 aa)
	UY3_14494	Glutamine synthetase. (405 aa)
	UY3_14061	Aspartate aminotransferase. (388 aa)
	UY3_18977	Amine oxidase. (541 aa)
	PPAT	Amidophosphoribosyltransferase. (865 aa)
	UY3_11939	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (414 aa)
	FOLH1B	Glutamate carboxypeptidase 2. (704 aa)
	ASNS	Asparagine synthetase [glutamine-hydrolyzing]. (561 aa)
	AGXT2	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (473 aa)
	ALDH5A1	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (409 aa)
	UY3_07111	L-asparaginase. (304 aa)
	DDO	D-aspartate oxidase. (751 aa)
	UY3_04283	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP. (472 aa)
	RIMKLB	Beta-citryl-glutamate synthase B. (150 aa)
	GLUL	Glutamine synthetase. (532 aa)
	ABAT	Uncharacterized protein. (113 aa)
	NAT8L	N-acetylaspartate synthetase. (122 aa)
	GOT1	Aspartate aminotransferase. (418 aa)
	UY3_01357	Amine oxidase. (588 aa)
	UY3_01029	Aspartate aminotransferase. (419 aa)
	ASPA	Aspartoacylase. (297 aa)
	UY3_00700	L-amino-acid oxidase. (461 aa)

Your Current Organism:

Chelonia mydas

NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABAT	AGXT2	M7BZY9	M7B8F2	Uncharacterized protein.	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.900
ABAT	ALDH5A1	M7BZY9	M7BB56	Uncharacterized protein.	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.900
AGXT2	ABAT	M7B8F2	M7BZY9	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.900
AGXT2	ALDH5A1	M7B8F2	M7BB56	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.509
AGXT2	ASNS	M7B8F2	M7B7L1	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Asparagine synthetase [glutamine-hydrolyzing].	0.572
AGXT2	DDO	M7B8F2	M7BLE6	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	D-aspartate oxidase.	0.522
AGXT2	UY3_11939	M7B8F2	M7AZH1	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.683
ALDH5A1	ABAT	M7BB56	M7BZY9	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.900
ALDH5A1	AGXT2	M7BB56	M7B8F2	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.509
ALDH5A1	UY3_11939	M7BB56	M7AZH1	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.538
ALDH5A1	UY3_14061	M7BB56	M7ATX5	Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Aspartate aminotransferase.	0.622
ASNS	AGXT2	M7B7L1	M7B8F2	Asparagine synthetase [glutamine-hydrolyzing].	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.572
ASNS	ASPA	M7B7L1	M7CAR9	Asparagine synthetase [glutamine-hydrolyzing].	Aspartoacylase.	0.902
ASNS	GLUL	M7B7L1	M7BQV6	Asparagine synthetase [glutamine-hydrolyzing].	Glutamine synthetase.	0.634
ASNS	GOT1	M7B7L1	M7C7B3	Asparagine synthetase [glutamine-hydrolyzing].	Aspartate aminotransferase.	0.953
ASNS	NAT8L	M7B7L1	M7C4M0	Asparagine synthetase [glutamine-hydrolyzing].	N-acetylaspartate synthetase.	0.923
ASNS	PPAT	M7B7L1	M7AZ82	Asparagine synthetase [glutamine-hydrolyzing].	Amidophosphoribosyltransferase.	0.500
ASNS	UY3_00700	M7B7L1	M7CLI2	Asparagine synthetase [glutamine-hydrolyzing].	L-amino-acid oxidase.	0.900
ASNS	UY3_01029	M7B7L1	M7CAN1	Asparagine synthetase [glutamine-hydrolyzing].	Aspartate aminotransferase.	0.953
ASNS	UY3_01357	M7B7L1	M7C9T2	Asparagine synthetase [glutamine-hydrolyzing].	Amine oxidase.	0.903