27 items (Chelonia mydas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UY3_18978	Amine oxidase. (513 aa)
	MCCC1	Methylcrotonoyl-CoA carboxylase subunit alpha; Belongs to the LAMP family. (1761 aa)
	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (240 aa)
	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)
	UY3_18977	Amine oxidase. (541 aa)
	ALDH6A1	Methylmalonate-semialdehyde dehydrogenase [acylating]. (519 aa)
	AGXT2	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (473 aa)
	UY3_10472	Methylcrotonoyl-CoA carboxylase beta chain. (520 aa)
	DBT	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (418 aa)
	PCCA	Propionyl-CoA carboxylase alpha chain. (276 aa)
	ACAT2	Acetyl-CoA acetyltransferase, cytosolic; Belongs to the thiolase-like superfamily. Thiolase family. (399 aa)
	DLD	Dihydrolipoyl dehydrogenase. (560 aa)
	UY3_16472	Succinyl-CoA:3-ketoacid-coenzyme A transferase 1. (344 aa)
	ALDH3A2	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (472 aa)
	AUH	Methylglutaconyl-CoA hydratase. (78 aa)
	ALDH2	Acyl-CoA dehydrogenase family member 10; Belongs to the aldehyde dehydrogenase family. (1709 aa)
	ACAA2	3-ketoacyl-CoA thiolase. (624 aa)
	HMGCS2	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (512 aa)
	HIBADH	3-hydroxyisobutyrate dehydrogenase. (237 aa)
	HMGCS1	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (532 aa)
	PCCB	Propionyl-CoA carboxylase beta chain. (867 aa)
	HADHA	Trifunctional enzyme subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family. (658 aa)
	ACADSB	Short/branched chain specific acyl-CoA dehydrogenase. (443 aa)
	ABAT	Uncharacterized protein. (113 aa)
	UY3_04858	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (364 aa)
	UY3_01357	Amine oxidase. (588 aa)
	UY3_00700	L-amino-acid oxidase. (461 aa)

Your Current Organism:

Chelonia mydas

NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABAT	AGXT2	M7BZY9	M7B8F2	Uncharacterized protein.	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.900
ABAT	ALDH2	M7BZY9	M7BN29	Uncharacterized protein.	Acyl-CoA dehydrogenase family member 10; Belongs to the aldehyde dehydrogenase family.	0.900
ABAT	ALDH3A2	M7BZY9	M7BKL8	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.900
ABAT	ALDH6A1	M7BZY9	M7B5A9	Uncharacterized protein.	Methylmalonate-semialdehyde dehydrogenase [acylating].	0.900
ABAT	DBT	M7BZY9	M7BC83	Uncharacterized protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.800
ABAT	HIBADH	M7BZY9	M7BWH3	Uncharacterized protein.	3-hydroxyisobutyrate dehydrogenase.	0.900
ABAT	PCCA	M7BZY9	M7BC89	Uncharacterized protein.	Propionyl-CoA carboxylase alpha chain.	0.800
ABAT	PCCB	M7BZY9	M7BXP9	Uncharacterized protein.	Propionyl-CoA carboxylase beta chain.	0.800
ACAA2	ACADSB	M7BQB2	M7BYB0	3-ketoacyl-CoA thiolase.	Short/branched chain specific acyl-CoA dehydrogenase.	0.958
ACAA2	ACAT2	M7BQB2	M7BDY2	3-ketoacyl-CoA thiolase.	Acetyl-CoA acetyltransferase, cytosolic; Belongs to the thiolase-like superfamily. Thiolase family.	0.915
ACAA2	ALDH6A1	M7BQB2	M7B5A9	3-ketoacyl-CoA thiolase.	Methylmalonate-semialdehyde dehydrogenase [acylating].	0.936
ACAA2	AUH	M7BQB2	M7BMZ2	3-ketoacyl-CoA thiolase.	Methylglutaconyl-CoA hydratase.	0.616
ACAA2	DBT	M7BQB2	M7BC83	3-ketoacyl-CoA thiolase.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.833
ACAA2	HADHA	M7BQB2	M7BY19	3-ketoacyl-CoA thiolase.	Trifunctional enzyme subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.	0.984
ACAA2	HIBCH	M7BQB2	M7AM07	3-ketoacyl-CoA thiolase.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.643
ACAA2	HMGCS1	M7BQB2	M7BX40	3-ketoacyl-CoA thiolase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.984
ACAA2	HMGCS2	M7BQB2	M7BR31	3-ketoacyl-CoA thiolase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.985
ACAA2	HSD17B10	M7BQB2	M7AQR3	3-ketoacyl-CoA thiolase.	3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.958
ACAA2	PCCA	M7BQB2	M7BC89	3-ketoacyl-CoA thiolase.	Propionyl-CoA carboxylase alpha chain.	0.928
ACAA2	PCCB	M7BQB2	M7BXP9	3-ketoacyl-CoA thiolase.	Propionyl-CoA carboxylase beta chain.	0.945