Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFA69495.1 | SFA79645.1 | SAMN04488528_100144 | SAMN04488528_100317 | Single-stranded DNA-binding protein. | Single-strand DNA-binding protein. | 0.701 |
| SFA69495.1 | SFB08686.1 | SAMN04488528_100144 | SAMN04488528_101159 | Single-stranded DNA-binding protein. | DNA polymerase-3 subunit alpha. | 0.907 |
| SFA69495.1 | SFB32213.1 | SAMN04488528_100144 | SAMN04488528_102914 | Single-stranded DNA-binding protein. | Single-strand binding protein. | 0.703 |
| SFA69495.1 | SFB34980.1 | SAMN04488528_100144 | SAMN04488528_103227 | Single-stranded DNA-binding protein. | DNA polymerase-3 subunit delta'. | 0.902 |
| SFA69495.1 | SFB43821.1 | SAMN04488528_100144 | SAMN04488528_105610 | Single-stranded DNA-binding protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.422 |
| SFA69495.1 | dnaX | SAMN04488528_100144 | SAMN04488528_10812 | Single-stranded DNA-binding protein. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.874 |
| SFA71911.1 | SFA92654.1 | SAMN04488528_1001189 | SAMN04488528_100692 | CRISPR-associated exonuclease, Cas4 family; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.413 |
| SFA71911.1 | SFA96138.1 | SAMN04488528_1001189 | SAMN04488528_100781 | CRISPR-associated exonuclease, Cas4 family; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. | Superfamily I DNA or RNA helicase. | 0.413 |
| SFA71911.1 | SFB17478.1 | SAMN04488528_1001189 | SAMN04488528_101582 | CRISPR-associated exonuclease, Cas4 family; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.413 |
| SFA71911.1 | SFB22487.1 | SAMN04488528_1001189 | SAMN04488528_10191 | CRISPR-associated exonuclease, Cas4 family; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. | DNA polymerase-3 subunit epsilon. | 0.427 |
| SFA71911.1 | SFB45160.1 | SAMN04488528_1001189 | SAMN04488528_10643 | CRISPR-associated exonuclease, Cas4 family; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.413 |
| SFA75399.1 | SFB08686.1 | SAMN04488528_100255 | SAMN04488528_101159 | DNA polymerase III, delta subunit. | DNA polymerase-3 subunit alpha. | 0.990 |
| SFA75399.1 | SFB22487.1 | SAMN04488528_100255 | SAMN04488528_10191 | DNA polymerase III, delta subunit. | DNA polymerase-3 subunit epsilon. | 0.976 |
| SFA75399.1 | SFB34980.1 | SAMN04488528_100255 | SAMN04488528_103227 | DNA polymerase III, delta subunit. | DNA polymerase-3 subunit delta'. | 0.993 |
| SFA75399.1 | SFB43821.1 | SAMN04488528_100255 | SAMN04488528_105610 | DNA polymerase III, delta subunit. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.994 |
| SFA75399.1 | dnaX | SAMN04488528_100255 | SAMN04488528_10812 | DNA polymerase III, delta subunit. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.993 |
| SFA75399.1 | ligA | SAMN04488528_100255 | SAMN04488528_10644 | DNA polymerase III, delta subunit. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.640 |
| SFA75399.1 | mutL | SAMN04488528_100255 | SAMN04488528_100170 | DNA polymerase III, delta subunit. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.483 |
| SFA75399.1 | polC | SAMN04488528_100255 | SAMN04488528_1005192 | DNA polymerase III, delta subunit. | DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.908 |
| SFA76923.1 | SFA79645.1 | SAMN04488528_1002140 | SAMN04488528_100317 | Hypothetical protein. | Single-strand DNA-binding protein. | 0.461 |
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