STRINGSTRING
LUC7L2 LUC7L2 WBP11 WBP11 CCDC12 CCDC12 BUD13 BUD13 CWC22 CWC22 RBM22 RBM22 Y1Q_0003409 Y1Q_0003409 GPKOW GPKOW PRPF38A PRPF38A LENG1 LENG1 PRPF31 PRPF31 HFM1 HFM1 HFM1L HFM1L SNW1 SNW1 Y1Q_0006834 Y1Q_0006834 PQBP1 PQBP1 DDX41 DDX41 SLU7 SLU7 TCERG1 TCERG1 DDX46 DDX46 PHAX PHAX SNRPA1 SNRPA1 PRPF3 PRPF3 DDX23 DDX23 TXNL4B TXNL4B PRPF4 PRPF4 CUNH9orf78 CUNH9orf78 RNPC3 RNPC3 SNRPB2 SNRPB2 WBP4 WBP4 RNASEL RNASEL CDC40 CDC40 WDR53 WDR53 SNRPD2 SNRPD2 MFAP1 MFAP1 ASCC3 ASCC3 SRRM1 SRRM1 PPIE PPIE SYF2 SYF2 SRRT SRRT SF3B2 SF3B2 CFDP1 CFDP1 Y1Q_0005189 Y1Q_0005189 CUNH10orf11 CUNH10orf11 Y1Q_0005192 Y1Q_0005192 Y1Q_0006899 Y1Q_0006899 TFIP11 TFIP11 SNRPB SNRPB PSEN1-2 PSEN1-2 PUF60 PUF60 AQR AQR WDR70 WDR70 DHX29 DHX29 CWC27 CWC27 PPWD1 PPWD1 DHX34 DHX34 ISY1 ISY1 PRPF6 PRPF6 ZRSR2 ZRSR2 CPD-2 CPD-2 BUD31 BUD31 LUC7L3-1 LUC7L3-1 SNRPD3 SNRPD3 ZMAT5 ZMAT5 SF3A1 SF3A1 DHX33 DHX33 SRRM3-1 SRRM3-1 DHX40 DHX40 Y1Q_0018252 Y1Q_0018252 SNRPA SNRPA CTNNBL1 CTNNBL1 NCBP2 NCBP2 PPIL1 PPIL1 SF3B1 SF3B1 PPIL3 PPIL3 DAW1 DAW1 U2SURP U2SURP DHX36 DHX36 CDC5L CDC5L FAM50A FAM50A SNRPE SNRPE PPRC1 PPRC1 DQX1 DQX1 CRNKL1 CRNKL1 NCBP1 NCBP1 SMU1 SMU1 SRRM2 SRRM2 Y1Q_0005374 Y1Q_0005374 SNIP1 SNIP1 SF1 SF1 TXNL4A TXNL4A SF3A3 SF3A3 SHD SHD SF3A2 SF3A2 LUC7L-1 LUC7L-1 PHF5A PHF5A SF3B3 SF3B3 PPIL4 PPIL4 SF3B5 SF3B5 RBM41-1 RBM41-1 CUNHXorf56 CUNHXorf56 NKAP NKAP RBMX2 RBMX2 PRPF8 PRPF8 PRPF18 PRPF18 RBM17 RBM17 ZMAT2 ZMAT2 IK IK Y1Q_0005435 Y1Q_0005435 PPIL2 PPIL2 SNRNP35 SNRNP35 Y1Q_0015762 Y1Q_0015762 PNISR PNISR SF3B4 SF3B4 SMNDC1 SMNDC1 UBL5 UBL5 CCDC94 CCDC94 PRPF19 PRPF19 GPATCH4 GPATCH4 FAM32A FAM32A SNRPC SNRPC DHX35-2 DHX35-2 CHERP CHERP DDX50 DDX50 SNRNP48 SNRNP48 Y1Q_0011861 Y1Q_0011861 CWC15 CWC15 SNRNP70 SNRNP70 SNRPD1 SNRPD1 SDE2 SDE2 GPATCH2 GPATCH2 DHX15 DHX15 SART1L SART1L CWC25 CWC25 SNRPG SNRPG SART1 SART1 DHX38 DHX38 SNRNP25 SNRNP25 CWF19L2 CWF19L2 RBM6 RBM6 WDR25 WDR25 DHX15-2 DHX15-2 PLRG1 PLRG1 DHX35 DHX35 RNF113A RNF113A EFTUD2-2 EFTUD2-2 PRPF39 PRPF39 Y1Q_0005389 Y1Q_0005389 ZCRB1 ZCRB1 XAB2 XAB2 TRNAU1AP TRNAU1AP SNRNP40 SNRNP40 ZCCHC17 ZCCHC17 ZNF830 ZNF830 SF3B6 SF3B6 GCFC2-1 GCFC2-1 SNRPF SNRPF LRRC51 LRRC51
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LUC7L2LUC7-like 2. (378 aa)
WBP11WW domain-binding protein 11. (633 aa)
CCDC12Coiled-coil domain-containing protein 12. (177 aa)
BUD13BUD13-like protein. (514 aa)
CWC22Pre-mRNA-splicing factor CWC22-like protein. (726 aa)
RBM22Pre-mRNA-splicing factor RBM22. (420 aa)
Y1Q_0003409Sperm acrosome membrane-associated protein 6-like. (169 aa)
GPKOWG patch domain and KOW motifs-containing protein. (438 aa)
PRPF38APre-mRNA-splicing factor 38A. (312 aa)
LENG1Leukocyte receptor cluster member 1. (267 aa)
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31 isoform B. (515 aa)
HFM1Putative ATP-dependent DNA helicase HFM1 isoform A. (735 aa)
HFM1LPutative ATP-dependent DNA helicase HFM1. (682 aa)
SNW1SNW domain-containing protein 1. (536 aa)
Y1Q_0006834Uncharacterized protein. (996 aa)
PQBP1Polyglutamine-binding protein 1 isoform B. (273 aa)
DDX41Putative ATP-dependent RNA helicase DDX41. (496 aa)
SLU7Pre-mRNA-splicing factor SLU7. (612 aa)
TCERG1Transcription elongation regulator 1. (970 aa)
DDX46Putative ATP-dependent RNA helicase DDX46. (1038 aa)
PHAXPhosphorylated adapter RNA export protein. (408 aa)
SNRPA1U2 small nuclear ribonucleoprotein A. (255 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3. (682 aa)
DDX23Putative ATP-dependent RNA helicase DDX23. (816 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4 isoform A. (522 aa)
CUNH9orf78Uncharacterized protein. (288 aa)
RNPC3RNA-binding protein 40. (512 aa)
SNRPB2U2 small nuclear ribonucleoprotein B. (268 aa)
WBP4WW domain-binding protein 4. (641 aa)
RNASEL2-5A-dependent ribonuclease. (732 aa)
CDC40Pre-mRNA-processing factor 17. (537 aa)
WDR53WD repeat-containing protein 53. (291 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2. (310 aa)
MFAP1Microfibrillar-associated protein 1. (358 aa)
ASCC3Activating signal cointegrator 1 complex subunit 3. (2136 aa)
SRRM1Serine/arginine repetitive matrix protein 1 isoform A. (791 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (300 aa)
SYF2Pre-mRNA-splicing factor SYF2. (245 aa)
SRRTSerrate RNA effector molecule-like protein. (751 aa)
SF3B2Splicing factor 3B subunit 2. (868 aa)
CFDP1Craniofacial development protein 1; May play a role during embryogenesis. (286 aa)
Y1Q_0005189Uncharacterized protein. (79 aa)
CUNH10orf11Uncharacterized protein. (184 aa)
Y1Q_0005192Uncharacterized protein. (72 aa)
Y1Q_0006899Suf domain-containing protein. (614 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (843 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
PSEN1-2Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (1221 aa)
PUF60Poly(U)-binding-splicing factor PUF60. (531 aa)
AQRIntron-binding protein aquarius isoform A. (1428 aa)
WDR70WD repeat-containing protein 70. (661 aa)
DHX29ATP-dependent RNA helicase DHX29 isoform B. (1203 aa)
CWC27Peptidyl-prolyl cis-trans isomerase CWC27-like protein. (468 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (628 aa)
DHX34Putative ATP-dependent RNA helicase DHX34 isoform B. (822 aa)
ISY1Pre-mRNA-splicing factor ISY1-like protein. (281 aa)
PRPF6Pre-mRNA-processing factor 6. (941 aa)
ZRSR2U2 small nuclear ribonucleoprotein auxiliary factor subunit-related protein 2. (472 aa)
CPD-2Carboxypeptidase D. (570 aa)
BUD31BUD31-like protein. (144 aa)
LUC7L3-1Luc7-like protein 3 isoform C. (462 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
ZMAT5Zinc finger matrin-type protein 5. (170 aa)
SF3A1Splicing factor 3A subunit 1. (787 aa)
DHX33Uncharacterized protein. (863 aa)
SRRM3-1Serine/arginine repetitive matrix protein 3 isoform A. (604 aa)
DHX40Putative ATP-dependent RNA helicase DHX40. (806 aa)
Y1Q_0018252Uncharacterized protein. (100 aa)
SNRPAU1 small nuclear ribonucleoprotein A. (334 aa)
CTNNBL1Beta-catenin-like protein 1 isoform B. (505 aa)
NCBP2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (168 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (163 aa)
SF3B1Splicing factor 3B subunit 1. (1301 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
DAW1Dynein assembly factor with WDR repeat domains 1. (427 aa)
U2SURPU2 snRNP-associated SURP motif-containing protein isoform B. (977 aa)
DHX36ATP-dependent RNA helicase DHX36. (991 aa)
CDC5LCell division cycle 5-like protein. (803 aa)
FAM50ARab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family. (666 aa)
SNRPESmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
PPRC1Peroxisome proliferator-activated receptor gamma coactivator-related protein 1. (887 aa)
DQX1Helicase C-terminal domain-containing protein. (670 aa)
CRNKL1Crooked neck-like protein 1. (693 aa)
NCBP1Nuclear cap-binding protein subunit 1. (794 aa)
SMU1WD40 repeat-containing protein SMU1. (513 aa)
SRRM2Serine/arginine repetitive matrix protein 2. (297 aa)
Y1Q_0005374Serine/arginine repetitive matrix protein 2-like. (291 aa)
SNIP1Chromatin modification-related protein MEAF6. (456 aa)
SF1Splicing factor 1 isoform B. (668 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SF3A3Splicing factor 3A subunit 3. (501 aa)
SHDSH2 domain-containing adapter protein D. (237 aa)
SF3A2Splicing factor 3A subunit 2. (307 aa)
LUC7L-1Putative RNA-binding protein Luc7-like 1 isoform C. (360 aa)
PHF5APHD finger-like domain-containing protein 5A. (151 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
PPIL4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (484 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
RBM41-1RNA-binding protein 41 isoform B. (447 aa)
CUNHXorf56Uncharacterized protein. (233 aa)
NKAPNF-kappa-B-activating protein. (287 aa)
RBMX2RNA-binding motif protein, X-linked 2 isoform B. (173 aa)
PRPF8Pre-mRNA-processing-splicing factor 8. (2260 aa)
PRPF18Pre-mRNA-splicing factor 18. (342 aa)
RBM17Splicing factor 45. (414 aa)
ZMAT2Zinc finger matrin-type protein 2. (199 aa)
IKProtein Red. (529 aa)
Y1Q_0005435Pre-mRNA-splicing factor SYF1-like. (113 aa)
PPIL2Peptidyl-prolyl cis-trans isomerase-like 2. (521 aa)
SNRNP35U11/U12 small nuclear ribonucleoprotein. (186 aa)
Y1Q_0015762Uncharacterized protein. (824 aa)
PNISRArginine/serine-rich protein PNISR. (613 aa)
SF3B4Splicing factor 3B subunit 4. (417 aa)
SMNDC1Survival of motor neuron-related-splicing factor 30. (269 aa)
UBL5Ubiquitin-like protein 5. (73 aa)
CCDC94Coiled-coil domain-containing protein 94. (330 aa)
PRPF19Pre-mRNA-processing factor 19. (492 aa)
GPATCH4G patch domain-containing protein 4. (239 aa)
FAM32AProtein FAM32A. (112 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (159 aa)
DHX35-2Uncharacterized protein. (712 aa)
CHERPCalcium homeostasis endoplasmic reticulum protein. (840 aa)
DDX50Nucleolar RNA helicase 2. (692 aa)
SNRNP48U11/U12 small nuclear ribonucleoprotein. (309 aa)
Y1Q_0011861G_PROTEIN_RECEP_F1_2 domain-containing protein. (276 aa)
CWC15Spliceosome-associated CWC15-like protein. (230 aa)
SNRNP70U1 small nuclear ribonucleoprotein-like. (489 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (115 aa)
SDE2SDE2-like protein. (397 aa)
GPATCH2G patch domain-containing protein 2. (582 aa)
DHX15Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform B. (764 aa)
SART1LU4/U6.U5 tri-snRNP-associated protein 1. (334 aa)
CWC25Pre-mRNA-splicing factor CWC25-like protein. (571 aa)
SNRPGSmall nuclear ribonucleoprotein G. (76 aa)
SART1U4/U6.U5 tri-snRNP-associated protein 1 isoform A. (536 aa)
DHX38Uncharacterized protein. (1102 aa)
SNRNP25U11/U12 small nuclear ribonucleoprotein. (156 aa)
CWF19L2CWF19-like protein 2. (872 aa)
RBM6RNA-binding protein 6 isoform A. (950 aa)
WDR25WD repeat-containing protein 25 isoform A. (505 aa)
DHX15-2Uncharacterized protein. (761 aa)
PLRG1Pleiotropic regulator 1. (514 aa)
DHX35Putative ATP-dependent RNA helicase DHX35. (1194 aa)
RNF113ARING finger protein 113A. (268 aa)
EFTUD2-2Tr-type G domain-containing protein. (972 aa)
PRPF39Pre-mRNA-processing factor 39-like. (748 aa)
Y1Q_0005389Glycine-rich cell wall structural protein 1.8-like. (272 aa)
ZCRB1Zinc finger CCHC-type and RNA-binding motif-containing protein 1. (243 aa)
XAB2Pre-mRNA-splicing factor SYF1. (747 aa)
TRNAU1APtRNA selenocysteine 1-associated protein 1. (287 aa)
SNRNP40U5 small nuclear ribonucleoprotein. (365 aa)
ZCCHC17Nucleolar protein of. (235 aa)
ZNF830Zinc finger protein 830. (327 aa)
SF3B6Splicing factor 3B subunit 6. (125 aa)
GCFC2-1GC-rich sequence DNA-binding factor 2 isoform C. (774 aa)
SNRPFSmall nuclear ribonucleoprotein F. (86 aa)
LRRC51Leucine-rich repeat-containing protein 51. (197 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (10%) [HD]