STRINGSTRING
PRPF31 PRPF31 DDX46 DDX46 SNRPA1 SNRPA1 PRPF3 PRPF3 DDX23 DDX23 PRPF4 PRPF4 SNRPB2 SNRPB2 SNRPD2 SNRPD2 ASCC3 ASCC3 SF3B2 SF3B2 SNRPB SNRPB PRPF6 PRPF6 SNRPD3 SNRPD3 ZMAT5 ZMAT5 SF3A1 SF3A1 SNRPA SNRPA SF3B1 SF3B1 SNRPE SNRPE TXNL4A TXNL4A SF3A3 SF3A3 SF3A2 SF3A2 PHF5A PHF5A SF3B3 SF3B3 SF3B5 SF3B5 PRPF8 PRPF8 SF3B4 SF3B4 SNRNP70 SNRNP70 SNRPD1 SNRPD1 SART1L SART1L SNRPG SNRPG SART1 SART1 EFTUD2-2 EFTUD2-2 SNRNP40 SNRNP40 SF3B6 SF3B6 SNRPF SNRPF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PRPF31U4/U6 small nuclear ribonucleoprotein Prp31 isoform B. (515 aa)
DDX46Putative ATP-dependent RNA helicase DDX46. (1038 aa)
SNRPA1U2 small nuclear ribonucleoprotein A. (255 aa)
PRPF3U4/U6 small nuclear ribonucleoprotein Prp3. (682 aa)
DDX23Putative ATP-dependent RNA helicase DDX23. (816 aa)
PRPF4U4/U6 small nuclear ribonucleoprotein Prp4 isoform A. (522 aa)
SNRPB2U2 small nuclear ribonucleoprotein B. (268 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2. (310 aa)
ASCC3Activating signal cointegrator 1 complex subunit 3. (2136 aa)
SF3B2Splicing factor 3B subunit 2. (868 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (240 aa)
PRPF6Pre-mRNA-processing factor 6. (941 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
ZMAT5Zinc finger matrin-type protein 5. (170 aa)
SF3A1Splicing factor 3A subunit 1. (787 aa)
SNRPAU1 small nuclear ribonucleoprotein A. (334 aa)
SF3B1Splicing factor 3B subunit 1. (1301 aa)
SNRPESmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SF3A3Splicing factor 3A subunit 3. (501 aa)
SF3A2Splicing factor 3A subunit 2. (307 aa)
PHF5APHD finger-like domain-containing protein 5A. (151 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
PRPF8Pre-mRNA-processing-splicing factor 8. (2260 aa)
SF3B4Splicing factor 3B subunit 4. (417 aa)
SNRNP70U1 small nuclear ribonucleoprotein-like. (489 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (115 aa)
SART1LU4/U6.U5 tri-snRNP-associated protein 1. (334 aa)
SNRPGSmall nuclear ribonucleoprotein G. (76 aa)
SART1U4/U6.U5 tri-snRNP-associated protein 1 isoform A. (536 aa)
EFTUD2-2Tr-type G domain-containing protein. (972 aa)
SNRNP40U5 small nuclear ribonucleoprotein. (365 aa)
SF3B6Splicing factor 3B subunit 6. (125 aa)
SNRPFSmall nuclear ribonucleoprotein F. (86 aa)
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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