12 items (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CNOT4	CCR4-NOT transcription complex subunit 4 isoform A. (762 aa)
	CNOT3-2	CCR4-NOT transcription complex subunit 3. (264 aa)
	CNOT3-1	CCR4-NOT transcription complex subunit 3. (456 aa)
	CNOT6L	CCR4-NOT transcription complex subunit 6-like. (627 aa)
	CNOT8	CCR4-NOT transcription complex subunit 8. (292 aa)
	CNOT6L-2	Endo/exonuclease/phosphatase domain-containing protein. (594 aa)
	CNOT10	CCR4-NOT transcription complex subunit 10. (745 aa)
	CNOT1	CCR4-NOT transcription complex subunit 1 isoform B. (2350 aa)
	RQCD1	Cell differentiation RCD1-like protein isoform A. (309 aa)
	CNOT11	CCR4-NOT transcription complex subunit 11. (447 aa)
	CNOT7	CCR4-NOT transcription complex subunit 7. (262 aa)
	CNOT2	CCR4-NOT transcription complex subunit 2 isoform A. (561 aa)

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT1	CNOT10	A0A151MSK9	A0A151MRD2	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 10.	0.999
CNOT1	CNOT11	A0A151MSK9	A0A151NXT5	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 11.	0.999
CNOT1	CNOT2	A0A151MSK9	A0A151PFE7	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 2 isoform A.	0.997
CNOT1	CNOT3-1	A0A151MSK9	A0A151M4T2	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 3.	0.971
CNOT1	CNOT3-2	A0A151MSK9	A0A151M4S5	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 3.	0.971
CNOT1	CNOT4	A0A151MSK9	A0A151LZ41	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 4 isoform A.	0.995
CNOT1	CNOT6L	A0A151MSK9	A0A151M7E6	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 6-like.	0.909
CNOT1	CNOT6L-2	A0A151MSK9	A0A151MPS7	CCR4-NOT transcription complex subunit 1 isoform B.	Endo/exonuclease/phosphatase domain-containing protein.	0.909
CNOT1	CNOT7	A0A151MSK9	A0A151PAJ2	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 7.	0.986
CNOT1	CNOT8	A0A151MSK9	A0A151MEQ5	CCR4-NOT transcription complex subunit 1 isoform B.	CCR4-NOT transcription complex subunit 8.	0.981
CNOT1	RQCD1	A0A151MSK9	A0A151N8Z2	CCR4-NOT transcription complex subunit 1 isoform B.	Cell differentiation RCD1-like protein isoform A.	0.999
CNOT10	CNOT1	A0A151MRD2	A0A151MSK9	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 1 isoform B.	0.999
CNOT10	CNOT11	A0A151MRD2	A0A151NXT5	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 11.	0.999
CNOT10	CNOT2	A0A151MRD2	A0A151PFE7	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 2 isoform A.	0.968
CNOT10	CNOT3-1	A0A151MRD2	A0A151M4T2	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 3.	0.898
CNOT10	CNOT3-2	A0A151MRD2	A0A151M4S5	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 3.	0.898
CNOT10	CNOT4	A0A151MRD2	A0A151LZ41	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 4 isoform A.	0.970
CNOT10	CNOT6L	A0A151MRD2	A0A151M7E6	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 6-like.	0.687
CNOT10	CNOT6L-2	A0A151MRD2	A0A151MPS7	CCR4-NOT transcription complex subunit 10.	Endo/exonuclease/phosphatase domain-containing protein.	0.687
CNOT10	CNOT7	A0A151MRD2	A0A151PAJ2	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 7.	0.949